XLOC_010414


Basic Information

Item Value
gene id XLOC_010414
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 5746308 ~ 5786042 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022087
ACTGACATGAACGTTGCTGAGAGCTTCACACTCCTTCCACTGGCTTTTCATCATCACACTGCATCCTGGTTCCATCAGTTTCTcacaaaacaagcacacacacgggCATCGAAATTAGACCAGGAAACCTTCTTCCACTGTcaaaattcacattttaaaaccTTCTATGGTAGACTTTCAGCTGCActaaaaataaagtcatttgcATGGTAAGAAAGATTTCAAAAGATACACCTTTTTGTTTCTTTCACTGTGTAAATCTTTaaggtacactttcaaaaagATGTTTCATTTTTCACGTAGCAATAGTACAATTTAGAACCGGCATGTCCTGAAGAGagtttacgtttttttttttcccgcctttttgttttcaaatcagCAACTGACAAAACAAAGGTACCACTGGTTTCTCTGCTCAACTACACGGTTAGCTCGACTATCGGCACTCTTTCAACAGAACATGTGTGGCCATCTTAGGTCATTTGATGATGCCTCTCCTTCGCCGGATGCGAGCAGTCTGAGAAAAGCTCTTGAGGAGATAAGAACAGATCAAAGTGACAAGGAGCCGACAGAACCCAAGCAAAATGGCAGTTCGTGAGAATGTCCACCGAGCCCTTGAGTGCTCTCCAATCTGCCGAGATGGAAAAAGGAGAAGAACGTCATCAAAAGTCAGaatttctaggcgcagccttggg
>TCONS_00022088
CTGGCTTTTCATCATCACACTGCATCCTGGTTCCATCAGTTTCTcacaaaacaagcacacacacgggCATCGAAATTAGACCAGGAAACCTTCTTCCACTGTcaaaattcacattttaaaaccTTCTATGGTAGACTTTCAGCTGCActaaaaataaagtcatttgcATGGTAAGAAAGATTTCAAAAGATACACCTTTTTGTTTCTTTCACTGTGTAAATCTTTaaggtacactttcaaaaagATGTTTCATTTTTCACGTAGCAATAGTACAATTTAGAACCGGCATGTCCTGAAGAGagtttacgtttttttttttcccgcctttttgttttcaaatcagCAACTGACAAAACAAAGGTACCACTGGTTTCTCTGCTCAACTACACGGTTAGCTCGACTATCGGCACTCTTTCAACAGAACATGTGTGGCCATCTTAGGTCATTTGATGATGCCTCTCCTTCAACTGCACCTTTGGTTGAGATGATTCTGGCCAGTAGTTCGGTTAGGCTGCTGCGAGGTTCTTCATCGTCCTCTGGTTTGGTCAGCAGGTTGATTTGTCCAGCAGGCGGCGCTGCGCGGGTGTGGCGCGTGTGTCCTGTTGCGGAGCCGACATTAGACTGAACTCCATCTTCTGAATGTACAGGGAGAGAAAGGCAGCTGCTGGTGGAGAGAGCAGCCAGCAGGGCACATACACAGAGTCCAGCGTTCatatctgaaacacacacaggtTACAGATTCATCAGCTTTATGATTCAATTAACATGAGGATTAGTGAGTGAAACTGCTCTGTAGAATTGCAATGTCTATGGGGAACTGCTTTAGTTGATTAAAAtcaaactataaaaat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022087 False 698 lncRNA 0.42 4 5746308 5786042
TCONS_00022088 True 851 lncRNA 0.43 3 5776049 5786003

Neighbor

gene id symbol gene type direction distance location
XLOC_010413 ndufa3 coding downstream 24922 5717760 ~ 5721386 (-)
XLOC_010412 si:dkey-283b15.2 coding downstream 74446 5650495 ~ 5671862 (-)
XLOC_010411 NA coding downstream 102570 5636286 ~ 5643738 (-)
XLOC_010410 CR848788.1 coding downstream 133828 5607138 ~ 5612480 (-)
XLOC_010409 NA coding downstream 157688 5453180 ~ 5588620 (-)
XLOC_010415 trak1a coding upstream 728 5786770 ~ 5873866 (-)
XLOC_010416 BX957314.1 coding upstream 84531 5870573 ~ 5870689 (-)
XLOC_010417 ctnnb1 coding upstream 396459 6182501 ~ 6205790 (-)
XLOC_010418 NA coding upstream 461981 6248023 ~ 6249246 (-)
XLOC_010419 NA coding upstream 505131 6291173 ~ 6351690 (-)
XLOC_010626 CR392024.2 misc upstream 15109070 20895112 ~ 20895175 (-)
XLOC_010408 NA non-coding downstream 572865 5169775 ~ 5173443 (-)
XLOC_010405 CU694364.1 non-coding downstream 638891 5107298 ~ 5107417 (-)
XLOC_010404 LO018201.1 non-coding downstream 684679 5061499 ~ 5061629 (-)
XLOC_010421 NA non-coding upstream 597488 6383530 ~ 6386642 (-)
XLOC_010424 NA non-coding upstream 689974 6476016 ~ 6484227 (-)

Expression


Co-expression Network