CI01000066_01578097_01581661


Basic Information

Item Value
gene id CI01000066_01578097_01581661
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 1578097 ~ 1581776 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000066_01578097_01581661.mRNA
ATTCGAGGGACCCCCGCCTGCTCTGGAGGGCCCTCTGGCAGTGAACACACGGCTACAGAGAGGTCGACGGCTGTTTTCTGGTCAGCTCAAAGGCCCGGAGTCTTTTACAGCAGACCAGAACGGAAACATCTACACAGGCACTGTTGACGGGAAGCTGTGGAGAATCAACAAGGAATCCCTCACTTTCATCACTCAGATGGGCCGGAACATCCCTGAATGTGGCACAAGTACGGACTATGAGCCAGTATGTGGTCGTCCACATGGTCTGCAATTGGACCGTGATGGGCAGCTTATCGTGGCTGACTCTTACCAGGGTCTTTTCAAGATTGACCCTTGGACTGGAGAGAAGACATTGCTACATTCCAGCAAAGAGGGAACTGATGGGATTCCCTTTGGCTTCCTAAATGGTCTGGAGATTTCAAAAAACGGAACCGTGTTTTTCACGGACTCCAGCAGTAAATGGGGAAGACGTCATGTCCGTTATGAGGTGTTGGAGACGAATCATCTGGGTCGCCTTCTCTCATATGACCCTGTGACCGGTCACGTTCGGACATTGTTGGATTCTCTCTACATGCCTAATGGCTTTGCCTTCTCACCTGATGAGGACTTCCTGCTTCTGGCTGAGACCAGTATTGGACGTATTATTAAGTTCTGGTTGAAAGGACCTAAAGCGGGCACTAAGGAGATCGTCCTGAACAACATGATTGGTTATCCTGATAACATCCGCCGCAGTGACCGTGGCACATTTTTGGTTGGCATATCCACCGTTAGATTCCGTGGCCGACTTTTCCCACCGTTCTTGGATCTAATTGGTCCGTACCCCACTCTTAAGCGCTTCATAGTAAAGCTCATTCCTCTCAGCTGGTACAATGTACTGTTGCCCAAGTACGGGCTGATTCTGGAGCTGGGGCCTGATGGAGAGGTGATTGACAGCTTACACGACCCCACGGGCAGCCTGACGTGGGCTGTGAGCGATGTCTTCCGGCAGGGGGCACACTACTATCTGGGCAACACTGACCTGCCATTTCTTCCTGTGCTGGAGGAGTGGAGCTGATCGTCTGGCTGTCTTACAAGTGGACTTATACATGGGAAAAGTAGGACTTTCGATAACCTTTCGTAGATAATGTAAAATTTGAATTTTAACAATGCACTGCAGTCTTGTGAGAAAA

Function

GO:

id name namespace
GO:0016844 strictosidine synthase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000066_01578097_01581661.mRNA True 1169 mRNA 0.50 7 1578097 1581776

Neighbor

gene id symbol gene type direction distance location
CI01000066_01567921_01573802 RASSF3 coding upstream 3854 1567877 ~ 1574243 (+)
CI01000066_01528166_01534032 NA coding upstream 43994 1528166 ~ 1534103 (+)
CI01000066_01479854_01525318 DGKI coding upstream 52779 1479854 ~ 1525318 (+)
CI01000066_01468657_01476221 CREB3L2 coding upstream 101843 1468657 ~ 1476254 (+)
CI01000066_01453501_01454593 SSBP1 coding upstream 123130 1453501 ~ 1454967 (+)
CI01000066_01589883_01604443 TBC1D30 coding downstream 8107 1589883 ~ 1605098 (+)
CI01000066_01640177_01643928 NA coding downstream 58401 1640177 ~ 1645798 (+)
CI01000066_01709877_01712786 NA coding downstream 127883 1709659 ~ 1713079 (+)
CI01000066_01713419_01715550 NA coding downstream 131643 1713419 ~ 1715886 (+)
CI01000066_01762973_01769561 NA coding downstream 180297 1762073 ~ 1769643 (+)
G270720 NA non-coding upstream 170086 1404775 ~ 1408011 (+)
G270877 NA non-coding upstream 178313 1399573 ~ 1399784 (+)
G270864 NA non-coding upstream 222707 1354115 ~ 1355390 (+)
G270855 NA non-coding upstream 254072 1323495 ~ 1324025 (+)
G270831 NA non-coding upstream 503391 1074219 ~ 1074706 (+)
G270902 NA non-coding downstream 91638 1673414 ~ 1687198 (+)
G270901 NA non-coding downstream 108354 1690130 ~ 1698632 (+)
G270931 NA non-coding downstream 143827 1725603 ~ 1727443 (+)
G270923 NA non-coding downstream 207820 1789596 ~ 1791364 (+)
G270972 NA non-coding downstream 259910 1841686 ~ 1848013 (+)
G270546 NA other upstream 1391420 184528 ~ 186677 (+)
CI01000066_00019553_00029834 PAHX, PHYH other upstream 1557824 19447 ~ 30531 (+)
G270973 NA other downstream 262676 1844452 ~ 1847752 (+)
CI01000066_02274624_02277624 NA other downstream 687393 2274557 ~ 2278119 (+)
CI01000066_02296138_02305439 CMAH other downstream 720434 2296071 ~ 2305637 (+)
G271105 NA other downstream 848934 2430710 ~ 2439169 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028451 zgc:194209 coding NC_007115.7 CM002888.2 4526248 ~ 4535189 (-)