XLOC_028451 (zgc:194209)


Basic Information

Item Value
gene id XLOC_028451
gene name zgc:194209
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4526248 ~ 4535189 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055222
TTACTCAATGCAGGCGCACATGTGTGAATGAAGTGTCCTTTACGTGAACCCGCCGTTGTTAAAGTTATCGCTGATGGATCAACGTTGACTCATCGCGGAGAGCAGCGCGTCTTCTTTCATGGCGCCCGGGAGCAAACGCTGAACTTTATACTGCAGTCCGAACGACTTTACCACACAACCATGCTTAGTCAGAGTTCAGTGAAGGTCGTATTGTTGGCCGTTGCAGTTGGAATTTATCTCATTCCCTCTCCTATTGATCCTGAGCCGTACATattCGAGGATCCTCCGCCGGCTCTCGAGGGCCCTTTAGCGGTGAACACGCGCTTACAGAGAGGCAGAAAACTGTTTTCTGGTCAGCTCAAAGGTCCCGAGTCGTTCACCGCTGACCAGAATGGAAACGTCTACACAGGCACTGTCGACGGGAAGCTTTGGAGAATCAACAACGAATCCCTGAAGTTCATCACACAGATGGGCCAGAACATCCCCCAATGTGGCTTCAGTACAGACTATGAGCCTGTTTGTGGTCGTCCTCATGGCCTGCGGCTGGACCGGGACGGGCAGCTGATTGTGGCAGACTCTTATTACGGCCTGTTTAAAGTCGACCCTTCGACCGGAGAGAAAACACTCCTACATTCCAGCAAAGACGGAGCTGATGGGATTCCCTTTGGCTTTCTGAACGGTCTGGAGATTTCTAAAAACGGCACTGTGTTCTTCACCGACTCCAGCAGTAAATGGGGAAGACGTCACGTTCGATATGAGGTGTTGGAGACGAATCGTCTGGGTCGCCTTCTGACCTTTGACCCCACCAGCGGTCGCGTTCGGACGCTGCTGGATTCTCTATATATGCCAAATGGATTTGCTTTCTCACCTGATGAAGACTTTCTGCTTCTGGCTGAAACCAGCATCGGACGGATTATCAAGTTCTGGTTGAAGGGGCCGAAAGCGGGTATGAAGGAGGTCGTCCTGAACAACATGATTGGTTACCCTGATAACATCCGGCTCAGTGACCGAGGCACATTTTTAGTAGGAATATCCACTGTTAGATTCGCCGGTCGCCTCTTTCCGCCGTTCCTGGATCTGATCGGTCCCTATCCTGCACTTAAACGTGCCATAGTGAAGCTGGTTCCTCTGAGCTGGTACGATCTCCTCCTGCCAAAGTACGGAGTGGTTCTGGAGCTGGACTCTGCGGGACAGGTGATCGACAGCCTCCATGACCCCACAGGACACCTCACATGGGCCGTCAGTGACGTCTTCCAGCACGGGACAGTTTACTATCTGGGCAACACCGATCTGCCATTCCTGCCAGTGCTGGATGAGTGGAGCTGAACACCACAACTGTGCATTCATCACGCAATGAGATGAGTTCAACAACGCATTACAGTACTGTGAATCATGCAAAACTACTGTGAATTATGCAATTAAAGCATTAGATCACTTCCAGAATGACAATGTCCTCTGCAAAATTTCCCTCGTCAAGCAAAATGTTAATTTCTTCCCTTCATCAGTTAAATCAATAACATTTTTGGGGTAAAACACACAGGATTTTCCTCTTTATAGTGGACTTCTATGGTGCTCTGTGCTTTGACTATGCAAACtgcagaagaagatattttgaagaatgttttgcaccatctattgacttccatagtatgtatCATCACCTACTATGGGTGTCAATGGCTACTGGCGATtttctggtttccaacattcttcaaaatatcttcaaactgatttatttttgggtggactgtccatttaaaactgctttgtcagtgttaaagTGGTGCAGGAATGCCGGGAAATCCCAGACAAATTCATATATTTTTCCATACAGTGGACTTTTATGGTTGTCAGTGGTTTAAATATACAAACTGCAAGTGGAAAAATCTCTAAATGATCTCTGCTGAGGAATAAGGATCTTTTAATGATCTTAGATAAGGTCATTCCCCTAAAAAAAAGGCCATTTACAAAGTTTGACCCATTGAAGTTGTAGTCTAAACCACTGAACACTATTCAAGTGCACTATATGGGAAAAGTCCTGCATGTTTTCCTccaaaaaaatagcattttggataactaaagagtgagtaaatgatcataAATGTTCCTTCTGGAAGTGAAGTGATCCTTCAAAGCTGCTGTAGTTTGTCTAATCCGGATGTTTTAGCTGTACGGGAGACGCTGGAGCATATGTCTGTGCACTGTCAAACACACTGGCCATTTGAAAGCATAATGCTTTCATTTAAAACTGAAGATTGTGTTTTGGTGCCAAACACAGATTGTTGatcatttgttaatttttcttGCAACGACTGCAAAAATAACTGCACAACATGAGTGCATTCAATAGTCATTTCGAATCATTTCAACTGATCATTTGTGAGAGAGTTTCATCCATCTACTTGTATTTGTAAtactattattacttatttttaaatgcattaattactGTAATGCTATTAATTGTAGTAGATTTAGTTTTGTTATTATGGGACAAGTGAAatcaaatgaaaatttaaaacattatctTGACAACcaccataattattattatttcagttgCTGTTTGTTTGATTATGTCTGtctatttagttattattaatgCTTCAAGTTAAATAACCAATCAGAAAtgtgtaatcattttatttttaatatttagtttgatTTGAGATCATTGTTTTAGTTAGCTATAACTaaagatttaatttttatttttaatattagatttaatttgatcatttattaGTTTAAGCGTCTATCTAC

Function

symbol description
zgc:194209 Predicted to enable strictosidine synthase activity. Predicted to act upstream of or within biosynthetic process. Orthologous to human APMAP (adipocyte plasma membrane associated protein).

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0016844 strictosidine synthase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-75 Predicted to enable strictosidine synthase activity. Predicted to act upstream of or within biosynthetic process. Orthologous to human APMAP (adipocyte plasma membrane associated protein).

Ensembl:

ensembl_id ENSDARG00000039356

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055222 True 2763 mRNA 0.42 9 4526248 4535189

Neighbor

gene id symbol gene type direction distance location
XLOC_028450 FP102892.1 coding downstream 9740 4514438 ~ 4516508 (-)
XLOC_028449 tbc1d30 coding downstream 18487 4484651 ~ 4507761 (-)
XLOC_028448 ntf3 coding downstream 94273 4397503 ~ 4431975 (-)
XLOC_028447 CU468826.3 coding downstream 139236 4376498 ~ 4387012 (-)
XLOC_028446 CU468826.1 coding downstream 151544 4321168 ~ 4374704 (-)
XLOC_028452 rassf3 coding upstream 5034 4540223 ~ 4592287 (-)
XLOC_028453 CABZ01020840.1 coding upstream 66626 4601815 ~ 4612116 (-)
XLOC_028454 DGKI coding upstream 91605 4626794 ~ 4706893 (-)
XLOC_028455 creb3l2 coding upstream 177221 4712410 ~ 4751983 (-)
XLOC_028456 ssbp1 coding upstream 217433 4752622 ~ 4756349 (-)
XLOC_028443 NA non-coding downstream 297093 4178834 ~ 4229155 (-)
XLOC_028444 NA non-coding downstream 315784 4207590 ~ 4210464 (-)
XLOC_028442 NA non-coding downstream 362372 4162825 ~ 4163876 (-)
XLOC_028461 NA non-coding upstream 405278 4940467 ~ 4962892 (-)
XLOC_028462 NA non-coding upstream 427768 4962957 ~ 4967711 (-)
XLOC_028471 NA non-coding upstream 886557 5421746 ~ 5459469 (-)
XLOC_028472 NA non-coding upstream 893129 5428318 ~ 5441954 (-)
XLOC_028474 NA non-coding upstream 1009813 5545002 ~ 5553182 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000066_01578097_01581661 NA coding CI01000066 null 1578097 ~ 1581776 (+)