G272060


Basic Information

Item Value
gene id G272060
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 2285318 ~ 2286986 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU308742
GTGAAATGTTTTGAAAATGCAAGCCCTAAAAAAACAATGCATTAAAATACAAGCACGGTTAATGCAATGCATATTTTTTTGTTTCAATTAGTGCAATTCAACAAGCTTTTTGTTTCAAAAACATATGGCATTATTTTACTTCCATATCAGACACCCAAAACCACATGACCAAGACAATGACACTGATAACCTACATTAAAGACCTTCCTTAGATGTATGTATTAAGGTTTCAGGCCCCCTACAGGCCCCCTACACCCTGATATCCTTGTAATTAAAAACACTAGACAAACATACTAAACAATTTTAGACATAATTACAGAAATTTATTACAGCTGTAATTGCATGCAGGTATCTTTAAAAATATAAGTGCATATGTATGTACACAGTAAGTGCATTGTATTAAATGATTAATTTAAATGTTGGTACATAGTAGTTAAAGACACCTAATATAAAGTGGGACCCATAAACCCATAAACCATTACGTCTATCCTCATAATGATAAGTGTACCAACATGTGTGTGCATTAAGACAGCACACAGCTGTTACTGCTCTCAACTGTCACGTCTGTTTCTCTGGCAGTTTGAAGGAAATGATCCCAGTCTGGTGCTGATAGTGGCAGTTCCGTCTGAAAATGATTCCAGAACCTGCCAGTGAAAAACAAATGCTTAGTTCATTCTCAGTTCATGTTAACAAATAAAACCTTACTGTAGTGTTACCATTAAAACTGAAAAACTTTGTTTTCATTAATTAAAATAAAGCTGAAATAAAATATAAATGTCAGATGAAAAACTTAAAAAACTTGAATTGAAAAATGAAAATTAGAAATTAAATAAGTTTAAATGGAAGTAGGTATGCACCAATATGAAAATTTTGGCCAATACCGATAACTGATAATTTTTTATATTTGAAAGCAGATAAATGATAAATTGGCTGATAAATCTAAATCCAAATTTTTATATAATTTTTGAGAGTCTCGGCTGAAGGAAATAAGCCATTATTTATCGGCTTTAATATATCGGCCAAATTTTCTTTTCAGGCCGATAACAATAACATTAAAAATGAACACATCTCACTATTAAAAGCCATGTCCAAAGCACACAATTATAATGTTCTCATTATAATGTTATGTAGCCTATATGACAGACTTGTGCTGCACATGTTGCACTTAAATTTATTTTCATTTTTGAAGTGATTCTAATCATATTTCAAGCAATTCAAACCCATCAAGGCAAACAGTGCACATCTGAAGTGTCTCAGCTGAAGGAAATAAGCCATTATTTATCGGCTTTAATATATCAGCCAAATTTTCTTATCAGGCCGATAATGACAACATTAAAAATGAACATATATCGGCCGATACCGATATGGTGGCTGATATATCGTGCATCCCTAAATGGGAGTACTAAAGTTAGTTAAACTCCAACTATATTATATATATAACCTTCATACCTTAAAACCATCATACACTCTTAGAAGAAAAGGTTCTCAATGAAACCTTCAAGGGTTTCGTCAGGTGCTGTTGGTTTTAATTGATTTTGCTTTGATTCAATTTTATGAATTAAACTGCTCATAGACATATTTTCTCACTAGAAAAAATTGAAATAACCTGTTAAACACAAGTATTATTCATTCATTAAAGACATTTCTCCTTATATAGAACCTTTTTGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU308742 True 1669 lncRNA 0.32 1 2285318 2286986

Neighbor

gene id symbol gene type direction distance location
CI01000066_02256946_02264417 CCDC107 coding downstream 19837 2256594 ~ 2265481 (-)
CI01000066_02197683_02248608 KCNC2 coding downstream 34155 2197683 ~ 2251163 (-)
CI01000066_02117493_02123683 NA coding downstream 161635 2116807 ~ 2123683 (-)
CI01000066_02074798_02093516 FAR1, FAR2 coding downstream 191802 2074798 ~ 2093516 (-)
CI01000066_02057126_02059813 NA coding downstream 225505 2057081 ~ 2059813 (-)
CI01000066_02325374_02330855 KRR1 coding upstream 38012 2324998 ~ 2330855 (-)
CI01000066_02388814_02390434 PHLDA1 coding upstream 101634 2388620 ~ 2390434 (-)
CI01000066_02395532_02401122 NAP1L1 coding upstream 108310 2395296 ~ 2401122 (-)
CI01000066_02438884_02448563 NA coding upstream 151848 2438834 ~ 2448839 (-)
CI01000066_02459724_02480935 NA coding upstream 172719 2459705 ~ 2481167 (-)
G272310 NA non-coding downstream 16257 2268818 ~ 2269061 (-)
G272304 NA non-coding downstream 32766 2252275 ~ 2252552 (-)
G272067 NA non-coding downstream 44053 2238182 ~ 2241265 (-)
G272294 NA non-coding downstream 107959 2177128 ~ 2177359 (-)
G272039 NA non-coding upstream 30942 2317928 ~ 2318427 (-)
G272317 NA non-coding upstream 47192 2334178 ~ 2334388 (-)
G272021 NA non-coding upstream 237516 2524502 ~ 2526631 (-)
G272367 NA non-coding upstream 243812 2530798 ~ 2532380 (-)
G272086 NA non-coding upstream 475162 2762148 ~ 2773639 (-)
G272221 NA other downstream 300090 1959102 ~ 1985228 (-)
CI01000066_01843043_01848783 NA other downstream 436459 1842554 ~ 1849466 (-)
CI01000066_01823227_01826380 NA other downstream 460615 1823029 ~ 1826817 (-)

Expression


Co-expression Network