CI01000066_02395532_02401122 (NAP1L1)


Basic Information

Item Value
gene id CI01000066_02395532_02401122
gene name NAP1L1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 2395296 ~ 2401122 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000066_02395532_02401122.mRNA
CACGTCAGCTGACGATGCAGATGATGCAGAACCCCCAGATTCTTGCGGCGCTGCAGGAGCGGTTGGACGGACTCGTGGGATCTCCCTCAGGGTACATGGAGAGCTTACCAAAGGTGGTGAAGAGACGCGTTAATGCCCTTAAGAACCTCCAGGTCAAATGCGCCCACATCGAAGCAAAGTTCTACGAAGAAGTCCACGAACTGGAGCGAAAATACGCTGCTTTGTATCAGCCTCTCTTCGACAAGCGGAGTGATATCGTGAGAGCAGCATACGAACCCACAGATGAGGAGTGCGAGTGGAAACAAGATGAAGAGGAAGAGCTGACAGAACATGATGAACCAATCCTCAAGCACTTACAAGACATTAAAGTCAAATTCTCTGACGCCGGCCAGCCAATGAGTTTCACATTAGAGTTCCACTTTGAGCCCAATGATTTCTTCACAAACACAGTCCTGACAAAGACCTACAAAATGAGGTCTGAGCCAGATGAGTCTGATCCCTTCTCATTCGACGGGCCAGAGATCATGGGCTGCACAGGATGCACGATTGACTGGAGTAAGGGCAAGAACGTCACACTGAAAACCATTAAGAAGAAACAGAAACATAAGGGACGTGGCACAGTTAGGACAGTCACCAAGACGGTCCCCAATGATTCATTCTTTAACTTTTTCTCTCCACCTGAAGTTCCAGAAAGTGGTGAACTGGACGAGGATTCCGAGGCCGTGTTAGCAGCAGACTTTGAGATTGGTCACTTCATTCGCGAGCGCATTGTTCCTAGGGCGGTGCTATACTTCACTGGGGAAGCCATCGAAGATGACGATGATGATTATGACGAGGAGGGAGAGGAAGCTGACGATGAGGAGGGTGAAGAGGAGGCCGACGAGGAAAATGATCCAGACTATGAGCCCAAGATGAATGACTGCAGTGTTGGCGTCATCTGTTTGGCTGTTAGTGTGGGAGTGCTCAGACCTTTAACCCTGATTTATAAATACTACAGTGCAGCTCTAAAACTACATACCACAATGCTGAAAATATGCTGCCCTACAGGGGTCAATTTGCACAGTCCTTTTCCCATTTTTCACTGAATCTGAGCATAGATGAGTAGTGCATCAGTACTTGCTCAAAGGGTTCAGGATGGGAATTGTAATGGATGGTTTTCCTCTGGCATTACTTGATATTAGTGCTGTCAAATTGATTAATCACATCTAACATAAGTTTTTACATAATGTTTGTATAAATGTATATATTATATGTGTGTCTTTGTGTACACACAAATTATGTAGGGTATTGATTCAGATGTCTCGATCTCGATTTGATTAAA

Function

symbol description
nap1l1 Predicted to enable chromatin binding activity and histone binding activity. Acts upstream of or within response to yeast. Predicted to be active in chromatin and nucleus. Is expressed in several structures, including immature eye; nervous system; neural tube; pharyngeal arch; and pronephros. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to several human genes including NAP1L1 (nucleosome assembly protein 1 like 1).

GO: NA

KEGG:

id description
K11279 NAP1L1, NRP; nucleosome assembly protein 1-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000066_02395532_02401122.mRNA True 1321 mRNA 0.46 11 2395296 2401122

Neighbor

gene id symbol gene type direction distance location
CI01000066_02388814_02390434 PHLDA1 coding downstream 4862 2388620 ~ 2390434 (-)
CI01000066_02325374_02330855 KRR1 coding downstream 64441 2324998 ~ 2330855 (-)
CI01000066_02256946_02264417 CCDC107 coding downstream 129815 2256594 ~ 2265481 (-)
CI01000066_02197683_02248608 KCNC2 coding downstream 144133 2197683 ~ 2251163 (-)
CI01000066_02117493_02123683 NA coding downstream 271613 2116807 ~ 2123683 (-)
CI01000066_02438884_02448563 NA coding upstream 37712 2438834 ~ 2448839 (-)
CI01000066_02459724_02480935 NA coding upstream 58583 2459705 ~ 2481167 (-)
CI01000066_02536961_02545237 NA coding upstream 135051 2536173 ~ 2545237 (-)
CI01000066_02548050_02596039 COG5 coding upstream 146618 2547740 ~ 2596419 (-)
CI01000066_02613320_02623007 COG5 coding upstream 212138 2613260 ~ 2623007 (-)
G272317 NA non-coding downstream 60908 2334178 ~ 2334388 (-)
G272039 NA non-coding downstream 76869 2317928 ~ 2318427 (-)
G272060 NA non-coding downstream 108310 2285318 ~ 2286986 (-)
G272310 NA non-coding downstream 126235 2268818 ~ 2269061 (-)
G272304 NA non-coding downstream 142744 2252275 ~ 2252552 (-)
G272021 NA non-coding upstream 123380 2524502 ~ 2526631 (-)
G272367 NA non-coding upstream 129676 2530798 ~ 2532380 (-)
G272086 NA non-coding upstream 361026 2762148 ~ 2773639 (-)
G272075 NA non-coding upstream 374839 2775961 ~ 2858298 (-)
CI01000066_02891474_02931062 PLEKHA5 non-coding upstream 526942 2890829 ~ 2931062 (-)
G272221 NA other downstream 410068 1959102 ~ 1985228 (-)
CI01000066_01843043_01848783 NA other downstream 546437 1842554 ~ 1849466 (-)
CI01000066_01823227_01826380 NA other downstream 570593 1823029 ~ 1826817 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028416 nap1l1 coding NC_007115.7 CM002888.2 2354892 ~ 2380173 (-)