CI01000066_02613320_02623007 (COG5)


Basic Information

Item Value
gene id CI01000066_02613320_02623007
gene name COG5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 2613260 ~ 2623007 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000066_02613320_02623007.mRNA
ATGGAGGCTAATCCGGAATCAACAGCGAATTCACTTCTGAAAGATGAGTGCTATACCGATTTCCTTAAAGAGGAATTCGACGTGAAGACATACACAGCTCAAGCCATTCATCATGCTATCATTGCAGAGCAGCTGGCAAAGCTGGCAGAGGGCATCAGTCAGCTGGACAAAGAGCTGCACTGCCAGGTAGTGGCCAGACATGAGGATCTACTAGCTCAGGCAACGGGGATGGAGTCTCTTGAAGGTGTCTTACAAATGATGCAGACCAGAATCGCAGCTCTCCAGAGTGCTGTGGACAGGATAAGGACCAAAATCGTTGACCCTTACAATAAGATTGTGGCACGGACGTCCCAGCTTGCCCGCTTACAGGTGGCGTGTGACCTGTTGAGAAGGATTATTCGCATCCTGTACCTGAGCAAACGACTGCAGGGGCAACTGCAAGGGGGCAGCAGAGAGATCACTAAAGCTGCCCAGAGCCTCAACGAGCTGGCTCTCTGTGGCTCTCTGGCATCCAGCGTAGAAAGCTGTCTAACAAATCTCCCATTAGGCAACCTGCCTTACACTGTGCACTCTGTCCTCAGATGGTGTTACAAGAAATCTGACGAGGTGCAGTTGGACAGTGATTGAGAGTTTATAAAGCTGCTGATAGCATCATGTTATTGGATTGTAAACAAGACGATCAATAAA

Function

symbol description
cog5 Predicted to be involved in intra-Golgi vesicle-mediated transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIi. Orthologous to human COG5 (component of oligomeric golgi complex 5).

GO:

id name namespace
GO:0006891 intra-Golgi vesicle-mediated transport biological_process

KEGG:

id description
K20292 COG5; conserved oligomeric Golgi complex subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000066_02613320_02623007.mRNA True 687 mRNA 0.49 8 2613260 2623007

Neighbor

gene id symbol gene type direction distance location
CI01000066_02548050_02596039 COG5 coding downstream 16841 2547740 ~ 2596419 (-)
CI01000066_02536961_02545237 NA coding downstream 68023 2536173 ~ 2545237 (-)
CI01000066_02459724_02480935 NA coding downstream 132093 2459705 ~ 2481167 (-)
CI01000066_02438884_02448563 NA coding downstream 164421 2438834 ~ 2448839 (-)
CI01000066_02395532_02401122 NAP1L1 coding downstream 212138 2395296 ~ 2401122 (-)
CI01000066_02652332_02680009 SLCO1C1 coding upstream 28320 2651327 ~ 2680040 (-)
CI01000066_02709190_02806338 PDE3A coding upstream 86183 2709190 ~ 2806338 (-)
CI01000066_02874325_02887004 AEBP2 coding upstream 251054 2874061 ~ 2887333 (-)
CI01000066_02891474_02931062 PLEKHA5 coding upstream 267822 2890829 ~ 2931062 (-)
CI01000066_03044933_03045997 NA coding upstream 421329 3044336 ~ 3045997 (-)
G272367 NA non-coding downstream 80880 2530798 ~ 2532380 (-)
G272021 NA non-coding downstream 86629 2524502 ~ 2526631 (-)
G272317 NA non-coding downstream 278872 2334178 ~ 2334388 (-)
G272039 NA non-coding downstream 294833 2317928 ~ 2318427 (-)
G272060 NA non-coding downstream 326274 2285318 ~ 2286986 (-)
G272086 NA non-coding upstream 139141 2762148 ~ 2773639 (-)
G272075 NA non-coding upstream 152954 2775961 ~ 2858298 (-)
G272078 NA non-coding upstream 311578 2934585 ~ 2935546 (-)
G272061 NA non-coding upstream 356457 2979464 ~ 2981352 (-)
G272221 NA other downstream 628032 1959102 ~ 1985228 (-)
CI01000066_01843043_01848783 NA other downstream 764401 1842554 ~ 1849466 (-)
CI01000066_01823227_01826380 NA other downstream 788557 1823029 ~ 1826817 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028421 cog5 coding NC_007115.7 CM002888.2 2548783 ~ 2637710 (-)