CI01000069_01645966_01647142


Basic Information

Item Value
gene id CI01000069_01645966_01647142
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 1644522 ~ 1647326 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_01645966_01647142.mRNA
GATGTGATTGATAACATACTTATGAGTTTATCCAAGGGAATCACATACTTTGATATGCAGGGAAGAAACATCAACCTGGACGGTGTTGTTGGATACATAATACTTCAAGCTGCCGCTTCTATGCTGAAGAGACTGAACAAGAGCCTTTCCACTGCCGTCCACGCTCTTCAGGAGACAGACCCCAATTACTTCAAAGAGTTTGAGCCCATTTTGGACAGCTCCTTTTGGTCCCTGCCTGCAGAATGGAGCTCCACAGACTCCTCGCTGGTTTATACCTCAGTGAGGTCTATGGAGTGCTACGATGAGCACCTGAGTGACAAGTGCATGACTCTCCTTCTAGGAACATGGTGAGAAAATTACAGACTAAAATAAAAATATATATAATAAAAAAATTATGAAAATCAGTCAATATGCTAACTGCTATTTTATTGAAAGGAAAGACAATGGAACCCCATGTATTGTGACTAAGTCTTGTAGAGACACAATGACACAGTTTGGATGTCCACACTATTCCCTGTCTCACCAGCTACTGTACTTCATGATAGGAACAATGGTAACCACTCTATTCATCTTTACTGAAATATAAGCAAATGATTGTTTACCTTTTGTTAAAGTGTTAGTTCACCCAAAAAATTCTGTCATTAATTACTCACCTTCGTTCATCTTCAGAACACAAATTAAGATATTTTTCATAAAATCCGATGTCTCAGTGAGGCCTCCATTGCCAGCAAGATAATTAACACTTTCAGATGCCCAGAAAGCTACTAAAGACATATTTAAAACAGTTCATTTGTCTACAGTGGTTCAACCTCGTTTACTGAAGTCACGTGACTTTGGCAGTTTGATATGTGCTCCGAACCACTGATTTGAAACAAAAGATTCGTAAAGCTTCGAAGCTTCATGAAGCAGTGTTTTGAAATCGCCCATCACTAGATATTGTTGAATAAAGTCATTATTTTGTTTTTTGGGGCACAAATAGTATTCTCGTCACTTCATAACATTAAGGTTGAACCACTGTAGTCACATGAACTGTTTTAAATATGTTTTTAGTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGACTGGTTGCAGTCTATCCTAACGTGGCAAGATCAAGAAGTGGGATGTTTTGGCAAAGAAGGTGAGTTATTGTAATCAGAAAAATTATAGTCATGTTATATATACATTAAAAAAAATCTCATCCTAATGAACGTAAAAGAATCTTTAAGCCATAGAGGTGTAAATGACCTTTTAAATTGTCAGTTGCAATATTGTATTTCCCCCCTCAGAGGACATCTCCCAGATCTTTGAGGAATTTTTGGATGCACCCCACAAACGGGTGAAAAGAAGGGAAAAAACACTGACAGGTGTTTGTTTGCTTTTAACGATGAAGTTGTTAATAAA
>TU312389
ACGTGATGGGTTTGCTTTGTCAAACAGCTTCGCCTTTGAAATAAGGGGGAAAAAAAGCTACTGGATAGACTACTCGTCCAATAACGATTTCCCCGTTTGATTTTCTATTCTTAAAGCTCTTAAAATGTGGTTTCCTTTCCTTGTACTTCTTTTTCTCTCGTCTACAATTGATTTATCAAAGCAGGATGTGATTGATAACATACTTATGAGTTTATCCAAGGGAATCACATACTTTGATATGCAGGGAAGAAACATCAACCTGGACGGTGTTGTTGGATACATAATACTTCAAGAGCAGCTGCGGGAGGCAACACGAACTTGGCCGCATTCAGATTTTCTGAGTCTCTCTCAGCGCGCAGCTGCCGCTTCTATGCTGAAGAGACTGAACAAGAGCCTTTCCACTGCCGTCCACGCTCTTCAGGAGACAGACCCCAATTACTTCAAAGAGTTTGAGCCCATTTTGGACAGCTCCTTTTGGTCCCTGCCTGCAGAATGGAGCTCCACAGACTCCTCGCTGGTTTATACCTCAGTGAGGTCTATGGAGTGCTACGATGAGCACCTGAGTGACAAGTGCATGACTCTCCTTCTAGGAACATGGAAAGACAATGGAACCCCATGTATTGTGACTAAGTCTTGTAGAGACACAATGACACAGTTTGGATGTCCACACTATTCCCTGTCTCACCAGCTACTGTACTTCATGATAGGAAC

Function

NR:

description
LOC566173 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_01645966_01647142.mRNA False 1795 mRNA 0.29 3 1644522 1647142
TU312389 True 711 TUCP 0.45 4 1645768 1647326

Neighbor

gene id symbol gene type direction distance location
CI01000069_01632361_01633951 NA coding downstream 10571 1632224 ~ 1633951 (-)
CI01000069_01571371_01593400 GSG1L coding downstream 51122 1571371 ~ 1593400 (-)
CI01000069_01519314_01531186 FBXL16 coding downstream 112936 1519201 ~ 1531586 (-)
CI01000069_01410825_01412802 NA coding downstream 231367 1410587 ~ 1413155 (-)
CI01000069_01155772_01178120 RBFOX1 coding downstream 466402 1155442 ~ 1178120 (-)
CI01000069_01653730_01654507 EEF2KMT coding upstream 6564 1653706 ~ 1654507 (-)
CI01000069_01654260_01655849 NA coding upstream 7118 1654260 ~ 1655849 (-)
CI01000069_01910549_01915438 NA coding upstream 263183 1910325 ~ 1916146 (-)
CI01000069_01965203_01971032 CYTH4A coding upstream 317381 1964523 ~ 1971032 (-)
CI01000069_02042680_02044541 NA coding upstream 394841 2041983 ~ 2045548 (-)
G275342 NA non-coding downstream 21652 1618094 ~ 1622870 (-)
G275323 NA non-coding downstream 86539 1557756 ~ 1557983 (-)
G275297 NA non-coding downstream 159635 1484673 ~ 1484887 (-)
G275295 NA non-coding downstream 162812 1480616 ~ 1481710 (-)
G275294 NA non-coding downstream 169300 1474999 ~ 1475222 (-)
G275326 NA non-coding upstream 6588 1654902 ~ 1745745 (-)
G275461 NA non-coding upstream 211570 1858712 ~ 1871716 (-)
G275487 NA non-coding upstream 342731 1989873 ~ 1991202 (-)
G275504 NA non-coding upstream 378309 2025451 ~ 2048682 (-)
G275519 NA non-coding upstream 418066 2065208 ~ 2155034 (-)
CI01000069_00952894_00955774 NA other downstream 688732 952361 ~ 955790 (-)
G275178 NA other downstream 698718 926923 ~ 945804 (-)
CI01000069_00044853_00051264 YPEL1, YPEL3, YPEL2, YPELD, YPELA, YPELC other downstream 1597308 43906 ~ 52896 (-)
CI01000069_02589498_02621318 SYT3 other upstream 964033 2589469 ~ 2621641 (-)
CI01000069_02997434_03008924 NA other upstream 1341884 2997275 ~ 3008924 (-)
G275699 NA other upstream 1345362 2992504 ~ 3078168 (-)
CI01000069_03415853_03417644 LIMD2 other upstream 1765831 3412973 ~ 3417644 (-)
CI01000069_01645966_01647142 NA other upstream 920 1644522 ~ 1647326 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026402 C3H16orf89 coding NC_007114.7 CM002887.2 28851175 ~ 28857195 (-)