CI01000069_03237106_03239286 (CCDC43)


Basic Information

Item Value
gene id CI01000069_03237106_03239286
gene name CCDC43
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3236862 ~ 3240591 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_03237106_03239286.mRNA
ATATAAAAACGCAAGTATTAAATGTAAATAATGAAATAGTTCGCTAATTCTTTCGTATTTCTTATTGAAAAGTATGTGTATTGATGCTTCATTTGAAAGTTTTTTTTTTTTTTTTATCGAAAATTAAGGATACATATATTAACAATGAGAAGAAAAAGCTTTATTTGAAAGTTAGTGTACCGCATTTGTGTCTGGCATTCTGTGCGGACATCCCGCCTCATTATCAGGACCCCAGCCAGGCAAGATGGCGGCGCCCCACCAAATCGCCGGGGAGTTTGAAAACTGGCTGAACGAGCGGTTGGACTCCCTTGAAGTAGACCGAGAAGTTTACGGAGCATATATACTCGGAGTGCTTCAGGAAGAGGAAAATGATGAAGAGCAGAAGGATGCTCTTCAGGGCATTCTCTCCGCTTTTCTGGAAGAAGACACGCTTGAAGAGGTTTGCCAGCAGATCCTAAAACAGTGGACTGAGTGTGGCAGCAGATCTGCAGCGAAGAATCAGACAGAGGATGAGGTTCAGGCCATTGCCAGTCTGATAGAGAAGCAGGCACAGATTGTGGTCAAACAGAAGGAGGTGTCAGAGGAGGCCAAGAAGAGGAAAGAGGCTCTACTGGCTCAGTATGCTCATGTAACAGATGAGGAAGAATATCCTTTCAATACATATCTGTTGTATTCTGTAATGGTTTCTATGATTGATTTCCATGACACCCTGTTGAAAACAAATTATCACTCAGTCTCTCTCAAGCTCACGGTTCAGCTGATCCAGTGTGGAGCAGTTTCCTTAACGTTTGTACTGAAGATGAGGAGGAGGAACAAACCGCAGTGGGAATACCCATTGAAAAATGTATCCTTTTTACACACCCCAGCCCTGTTCAAAAACACCAATGTCGAGGATGTTTTAAACCGCCGCAAACAGCAGCGTGACCAGGCCAGAGAGGACGCACAGAAGAAGAAAGAACAAGATAAGATGCAACGCGAGAAAGACAAGCTGGCCAAGCAGGAGCGCAAGGACAAAGAGAAGAAACGCACACAGAAAGGAGAGCGCAAGAGATAGAGGGGAAATAGAAAAAACTTTGCAGACTATATAATGCCAAGGTCATTTACCTAGAAGAGATAAAACAATGAGACCTCAGCAGACAATGTCCCAAACAAACATGTATGCATCCATATCCAGTTTTGGGTCTGATATAGTGTATTGAAAGATAATGTTGGGCCTAATGAGCTGTTTTCTTGTACAAAACTAATCGCAAACCAGCAAACTGGGTGAGAATTATATCGTGACACATTAATTTCAGATTTATTACAGGTGCTGACTGCTGTGCTACTTATTTAAGGGTAAATCACACAAAACTGCCAAAACATGTTCAGGTCACATTTCAACCCAAAAATCTATACATTTATATTTTGTTTAAAGACCCAATTCTCATTACTCTATTTGAAAAATATTTAAATTGTAAAATAATTGTAATGATATATACAAAACATCTTACTAATTTTACTTACTAATACATCAACGTTTTATTAATTCATTCTCTCGTTTTACTGAATCATGGCCACATTGTAATAATTAGTTCCTTTTTTATATATATATATATATATATATATACAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAATGGTGAAATGTGACCTTGACATGTTTCTGTGAGATTCTCTTTAACATTTACCAGCAGATAACTATCATGCTTGTGTCTAAAAACAGCATAACTTCTCTTTTTATTGCCTTGAGGGACTTTCAAATAACCTGTGAACCTGTTTTATATGTTTTCCATAAGCTGCTTCTTAGTAGCACTCCAGTGATTTTTTTTTTAAAACAGTAACTCAAATTACAAAAATATATCTATATTTATTCAGCTCACAAGCTTTTTCAGAACAACCTGAAACCAACTGAAGCCTTCTTGTCATGTAGCAATATATGGAGAGGGCTCAGAGACAACCCAAAGACAGAGAAACATAACTGCTAATGAATAGGCGGGACATGTGTACCTTTTTTTTTTTTTTTGCGCTCAAACTAATAGTGTGGTGGATGTTTCTGTCTCAGTTGTGGTTTATTTTTATTGTAGGACACTGAACCTAAGAGATGATCCTAAAGCAAGAAGGGTATATGTGTGCAAATATATCAATTGACAACAGTTCATTTGAAAGCTGCTACATATTGTGCCAATACCTTGTAGACTGCCTTCTCATATACTACAATGGATTGCACTGTAGGTAAACTAATATCTTTAAACCTTTCTTGTCTGTTTGCTTGTAAGATCAGGTGATTTGAGCATTCTTTAATCAGAGCAACAATATTTAATATTTTGTATGCTAAAATATTCCAAAATTGGTACA

Function

symbol description
ccdc43 Orthologous to human CCDC43 (coiled-coil domain containing 43).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_03237106_03239286.mRNA True 2359 mRNA 0.37 4 3236862 3240591

Neighbor

gene id symbol gene type direction distance location
CI01000069_03140325_03168014 NA coding upstream 68780 3139859 ~ 3168082 (+)
CI01000069_03105942_03125404 C1QL1 coding upstream 111249 3105942 ~ 3125613 (+)
CI01000069_02991356_02994073 NA coding upstream 242543 2990112 ~ 2994319 (+)
CI01000069_02982693_02987269 CLEC19A coding upstream 249335 2982563 ~ 2987527 (+)
CI01000069_02927711_02933564 NA coding upstream 303283 2927437 ~ 2933579 (+)
CI01000069_03250683_03252335 FZD2.S, FZD2 coding downstream 10092 3250683 ~ 3252785 (+)
CI01000069_03273461_03285388 MYLK5 coding downstream 32870 3273461 ~ 3286343 (+)
CI01000069_03292108_03292508 NA coding downstream 51517 3292108 ~ 3292784 (+)
CI01000069_03293097_03294020 NA coding downstream 52439 3293030 ~ 3294140 (+)
CI01000069_03306832_03309710 BRAFLDRAFT_264459, MGC82392, GDF8, DCAF7 coding downstream 65826 3306417 ~ 3309710 (+)
G274526 NA non-coding upstream 21040 3215623 ~ 3215822 (+)
G274524 NA non-coding upstream 37055 3199484 ~ 3199807 (+)
G274507 NA non-coding upstream 55120 3181506 ~ 3181742 (+)
G274504 NA non-coding upstream 58630 3177916 ~ 3178232 (+)
G274499 NA non-coding upstream 68405 3168226 ~ 3168457 (+)
G274536 NA non-coding downstream 23008 3263599 ~ 3263826 (+)
G274537 NA non-coding downstream 24496 3265087 ~ 3265310 (+)
G274509 NA non-coding downstream 56746 3297337 ~ 3299001 (+)
G274512 NA non-coding downstream 58820 3299411 ~ 3302842 (+)
G274545 NA non-coding downstream 85423 3326014 ~ 3331130 (+)
CI01000069_02894136_02894807 COX6A2 other upstream 341974 2893418 ~ 2894947 (+)
G274270 NA other upstream 555704 2672624 ~ 2681158 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D other upstream 1064669 2031954 ~ 2040427 (+)
G273359 NA other upstream 2757781 477727 ~ 479081 (+)
G274603 NA other downstream 559432 3800023 ~ 3803501 (+)
G274619 NA other downstream 888537 4129128 ~ 4133378 (+)
CI01000069_04556116_04558002 PYY, PYYA other downstream 1314718 4555269 ~ 4558480 (+)
G274953 NA other downstream 1683876 4924467 ~ 4926687 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location