XLOC_010486 (cnfn)


Basic Information

Item Value
gene id XLOC_010486
gene name cnfn
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11790640 ~ 11798994 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020580
TCAGAACATCATTCCCTGGAGGAGGTGAGACGATATTAGGAAGACTCTACATTGAAACAGGTTTCTGTTGTCAGTGATGTCATATCAGGCAGAATCAATGACGTCTCAGCCTCAAATGACTGTAACCAGTTACACAGTTTCTCACTGGAGCTCTGACGTCTGTGACTGCTGTGATGACTGCGGCATCTGTCTGTGTGGGGCATTTATTCCTTGCATCTTGGGTTGTAAGGTGGCACAGGATAATGGCGACAGCTGCTGTCTGCCCTTCCTACCTGGAGCTATGGTTGCACTGAGGACCAGCATCCGTGACCGATATCATATTAATGGATCTGTCTGTGATGACTGGGTGATCATGACCTGCTGCTCTTTCTGTGGACTCTGTCAGCTGGCCCGAGAACAGAAGGCGAGAGGCTAATTTGGAAACGAAGGgaatggaataaatgattaaaaaaaaaactaaattgatgGAACTGAAttttttaatatgatttgctttttttccccaaactgtcTCAAAGTTTTAAATGACCCTTCAACTATGAAGTGTTAGATTTGATTTCATTGAACCttgcattatattttatacaacaaACCAAACCCTTATTAACTTTTTACATCAATCAGTCTACCTAAATTTAGggcaatattattataaaaaaaatctgataattaTCAgtatacaaatatgtatttacagaaagatttctctgcatgacaaataaaaacaacaagacTAGGCAAAA

Function

symbol description
cnfn Predicted to be active in cornified envelope. Is expressed in several structures, including alar plate midbrain region; gut; hatching gland; musculature system; and optic vesicle. Orthologous to human CNFN (cornifelin).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0001533 cornified envelope cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-110 Predicted to be active in cornified envelope. Is expressed in several structures, including alar plate midbrain region; gut; hatching gland; musculature system; and optic vesicle. Orthologous to human CNFN (cornifelin).

Ensembl:

ensembl_id ENSDARG00000041115

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020580 True 743 mRNA 0.39 4 11790640 11798994

Neighbor

gene id symbol gene type direction distance location
XLOC_010485 tlr21 coding downstream 1532 11785967 ~ 11789108 (-)
XLOC_010484 zgc:158701 coding downstream 10979 11760602 ~ 11779661 (-)
XLOC_010483 NA coding downstream 151168 11597384 ~ 11639472 (-)
XLOC_010482 BX005242.1 coding downstream 251819 11437869 ~ 11538821 (-)
XLOC_010481 znf526 coding downstream 549216 11227246 ~ 11241424 (-)
XLOC_010487 cxcr3.1 coding upstream 54218 11853212 ~ 11859309 (-)
XLOC_010488 cd4-1 coding upstream 112903 11911897 ~ 11946139 (-)
XLOC_010489 si:ch73-296e2.3 coding upstream 161423 11960417 ~ 11963804 (-)
XLOC_010490 usp5 coding upstream 166377 11965371 ~ 11986321 (-)
XLOC_010491 NA coding upstream 193572 11992566 ~ 12005084 (-)
XLOC_010626 CR392024.2 misc upstream 9096118 20895112 ~ 20895175 (-)
XLOC_010480 NA non-coding downstream 778988 10980052 ~ 11011652 (-)
XLOC_010479 NA non-coding downstream 871206 10917584 ~ 10919434 (-)
XLOC_010478 CU468227.1 non-coding downstream 874236 10916290 ~ 10916404 (-)
XLOC_010492 CU467865.1 non-coding upstream 213080 12012074 ~ 12012188 (-)
XLOC_010497 CR388102.3 non-coding upstream 440413 12239407 ~ 12239460 (-)
XLOC_010498 CR388102.2 non-coding upstream 448868 12247862 ~ 12247920 (-)
XLOC_010499 CR388102.4 non-coding upstream 451274 12250268 ~ 12250323 (-)

Expression


Co-expression Network