CI01000069_04089580_04103908 (HSD3B7)


Basic Information

Item Value
gene id CI01000069_04089580_04103908
gene name HSD3B7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4089580 ~ 4104659 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_04089580_04103908.mRNA
CACCTGTTGAGAGTTTTGTTGGAGAAAGAAGATAATATCAAGGAGATCAAGCTTTTCGATAAAAACGTTTTCCCAAGTCTACAAAGTCACAGTACAGAGCATGTGAAGGTGGTGGTGGTGCAGGGGGATATAACAGATTACGGGAGTGTGCGTGATGCCTTTCAGGGAGCAGACCTGGTTATCCACGCGGCTAGTTTGGTTGATGTGTGGTATAAAGTCCCTGAGAAGGCCATCTATGCTGTCAATGTACAAGGGACGGAGAATGTAATAAATGCCTGTGTAGAAATCGGTATTCAGTATTTGATCTATACAAGCTCCATGGAGGTGGTTGGTCCAAATGTAAAAGGAGATACATTCATTAGAGGGAATGAGGATACTCCATATAATATATACCATGAGATGCCCTACCCGAAGACCAAAGCTGCTGCTGAGAAAATGGTGCTGGGAGCCAATGGCACAAAGCTAAAGGGAGGGAACATTCTCTACACATGCTGTCTGCGACCAACAGGGATCTATGGGGAACAACATCAGCTCATGAAGGACTTCTATCTGAACGGGATCCGTACAGGTGGTTGGGTAATCAAGGGAGTTCCACGGGACACGGAGCACGGACGGGTCTATGCAGGTAATGTTGCCTGGATGCACCTGTTAGCAGCACGTGCTCTGCGGGAACATCCTGATCGGCTGGGTGGGGAATTTTATTTCTGCTACGATGACTCGCCATACAAGAGCTACGATGAATTCAACATGCAGTTCCTGTCAGCCTTCAACTTTCGCCCATTGCACGTGCCAGTGTGGGTGCTGTGGTTCATAGCGTGGATGAACGACCTGCTGCGCTGGCTCCTCAAGCCGTTCTACAACTACACACCACTGCTCAATGGATACACACTCGCTGTGGCCTGCACACCCTTCACTGTCTGCACAGACAAAGCATTTCGTCACTTTCAATACCGACCGCTCTACAGCTGGGAGCAGTGTCTGGCTCGCACGCAGAGCTGGGTCAACACGTTCCCTTTAGAAACCAGCAATAAGGACACCTAACAGCTGCTGCAATGTCACGGGGACAGTTTTAATTAACACATCTGTGGCCAATAATGATTTTTTTGTGACTCATGTAATGATGGACTGCACAGAAAAGACTAGAAATGTTTAATGTTTATTGTAGTATTTAGTGTGTGCTTTACATTAAAGGGATAGTTCACCCCAAAATAAAAGTGTTCAGCAGAAGAAAGAAACTCATACAGGCTTGGAACAACCTGAGGGTGAGTAAATGATGACAGAATTTCATTTTTGGTGAACTATCCCTTTAAAGCACACTTAAACAGAGCACCTCTTAATCATAGAATCACAGTTGTGTTAATCTATCAGACATTTAGATGAATGAAAATCCATGTTGTTATTGATGTAATAGTAACAACTGGGAGCATAAACTTTACTTTACAAGCACTTTCATACAAAATGCACAAGTGAGGCTATTTTGAGGGTAATCTGGCAATACATAAACGTTGTCTTTTGTTGATCTGATAGCTGAAGTCTTTGAGCTAAATATACTTAATGTACCAAATATAAAGTATTTTATAATCCACCACATATAGTTTAATATTTATACATTTCATTGTCCAAATTATTTCATTGAAAAATATTTTGTGACATCACTATATGTTTACCTTTTACAGATAATTATGTGTGAACACAAGCTTTTAATTATTTGCATTAATATTCCGTTTACGTAAATATTTAATTGTTTATATGAAACAACGTTCTCTGTTCAAAAAAAATAATGCAAAGCAAA

Function

symbol description
hsd3b7 Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to act upstream of or within steroid biosynthetic process. Is expressed in several structures, including adenohypophysis; digestive system; lens; macrophage; and solid lens vesicle. Human ortholog(s) of this gene implicated in congenital bile acid synthesis defect 1 and intrahepatic cholestasis. Orthologous to human HSD3B7 (hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7).

GO:

id name namespace
GO:0016853 isomerase activity molecular_function

KEGG:

id description
K12408 HSD3B7; cholest-5-ene-3beta,7alpha-diol 3beta-dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_04089580_04103908.mRNA True 1792 mRNA 0.41 6 4089580 4104659

Neighbor

gene id symbol gene type direction distance location
CI01000069_04055396_04078361 SETD1A coding upstream 10840 4055396 ~ 4078740 (+)
CI01000069_04047810_04052352 NA coding upstream 36934 4047576 ~ 4052646 (+)
CI01000069_04042802_04047285 NA coding upstream 42223 4042802 ~ 4047357 (+)
CI01000069_04037283_04041863 NA coding upstream 47717 4037283 ~ 4041863 (+)
CI01000069_04031492_04035239 KAT8 coding upstream 54200 4031492 ~ 4035380 (+)
CI01000069_04113962_04124908 TBC1D10B coding downstream 8422 4113081 ~ 4125207 (+)
CI01000069_04143761_04147538 CD2BP2 coding downstream 39102 4143761 ~ 4147679 (+)
CI01000069_04151875_04159107 NA coding downstream 47216 4151875 ~ 4159191 (+)
CI01000069_04165021_04170544 NA coding downstream 59469 4164128 ~ 4170555 (+)
CI01000069_04203202_04214241 NA coding downstream 98543 4203202 ~ 4214325 (+)
G274760 NA non-coding upstream 87357 3998983 ~ 4002223 (+)
G274748 NA non-coding upstream 157176 3932068 ~ 3932404 (+)
G274746 NA non-coding upstream 167009 3922288 ~ 3922571 (+)
G274743 NA non-coding upstream 205823 3883537 ~ 3883757 (+)
G274737 NA non-coding upstream 215600 3873776 ~ 3873980 (+)
G274671 NA non-coding downstream 34471 4139130 ~ 4140762 (+)
G274659 NA non-coding downstream 36221 4140880 ~ 4141167 (+)
G274669 NA non-coding downstream 79543 4184202 ~ 4192064 (+)
G274653 NA non-coding downstream 116763 4221422 ~ 4370572 (+)
G274775 NA non-coding downstream 152785 4257444 ~ 4306259 (+)
G274603 NA other upstream 286079 3800023 ~ 3803501 (+)
CI01000069_02894136_02894807 COX6A2 other upstream 1194692 2893418 ~ 2894947 (+)
G274270 NA other upstream 1408422 2672624 ~ 2681158 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D other upstream 1917387 2031954 ~ 2040427 (+)
G274619 NA other downstream 24469 4129128 ~ 4133378 (+)
CI01000069_04556116_04558002 PYY, PYYA other downstream 450650 4555269 ~ 4558480 (+)
G274953 NA other downstream 819808 4924467 ~ 4926687 (+)
CI01000069_05046565_05048523 NA other downstream 941568 5045967 ~ 5049408 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location