CI01000069_04203202_04214241


Basic Information

Item Value
gene id CI01000069_04203202_04214241
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4203202 ~ 4214325 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_04203202_04214241.mRNA
ATGGACTTCTATATCAATCTGAAGGTGAATTTCCGAGGGAATGCGAAGAGTTTCCTGCTGTCTGGCTCAGAGACGAAGAGTTGGGAGTCTATGGAGGCCATGGTGAAGAGGTCCTTTGGCCTGTGTAATTTACAACTGACTTATTTCGATGAGGAAAATGAAGAGGTATCAATCAACAGCCAATTGGAATATGAAGAAGCCCTGAAGAGTGCAGCACGACAGGGGAACAGACTACAAATGAACGTGTATGAGACGAGGGGCAGTAGAGCCACAGTGCCAGGGCCGGGCCCACCACCAGGATCAGGGGTGGGCTTGGGCCAGGTGAAACCTGGTACTGTTGGAGAACCCAAGAAGGGATTCAGGCCTCCTCAGCACTGCCCTACTTTGGCACAAGTGGTGAGTCGCAAAGTTCAGGCCGCAGTCCCAGAGGAAGGATTGGTAATTGTAAATGAACTCAAAGGTGGGAAGGCAGAAGATAAGACACCTCCAGCTTGGTTCACTTCATACATGGAAAAGTTTAAGGACCAGGTGGTTAGGGAGGCAGTAGAGAAGATTTGTAGGGAGTTCTCTGGACAATGCTGCATCCATAAGCCAGTGGGACCAGAAGCTCAGGTTCCTGAGGTCACCTCATCCACTCTGCCCGGGGCCCCAAGTTCAGCTCCAGCCTGCAGCAGCTGCCGGGGCCAGACCGCAGGTGGCGGATACCAATGCAGTGTGTGTACCTCCTGCACTCTGTGTGAGCCTTGTAGCTTCTCACATGATCCAAGCCACAACCTTGTGAGAGCCAGAACTCCCCTGTCTATTCCTGAGCACGGCTCCCCAGCACCAGACCACAGCAGGTTCTACAGAAGGGGTGACCGGAGCTTTCGCAAGGCCGAGAAGCAGCGTCTTAAAGCAGAGAAGCGTCAGCTCAAGGCGGAGGTGAAGGAGATCAGGAAGCAGCTGAGGATGGAGAGGAGGGGGCTGCAGTGGAGCACTGCTGGAGAAGGGAGCTCTTCACCCGTCCTGCTGCAGCCACGCGCCACACAGGCAAACAGCCCAGATCGTCCTAAACGTCCATGCCCGCTGGCAGTGCCAGCTATGACAGCGCTGCTCCTGGATGAAAACCTGCCTGATGGATCACGTCTGCGTCCTGGGACCAAGTTCATTAAATACTGGAAAATGAAAAACAGTGGAAGAGTGTGCTGGGACTCTGAGACCAAGTTGAAGTTCATGTGGGGAAACCTGGCAGTGGGCTCGGGTGAAAGATGGCGGGAGGTCGCAGTACCCACACTACAGCCAGGACAGGTGGGTGTGGTCAGCGTGGCACTTTGTGCTCCGACGTTGGAGGGCACCTATACGTCCCATTGGCGCCTGGCACACAGAGGAGAGCAGTTTGGGCCGCGTGTTTGGTGCAGCATCGTTGTGGATCCACATGCTCCTACAGCCATCTGTGCTGACGGGCTGCTGGTGTCTCCCTGTGTCACCCCGCAGGAGAAGTCTTCCCGCACTCTTGAGAGAGAAGAGAAATGCCGGGCCTCAAGGGACCAACTAGTTTTGTCTGTGAACCAGGACTGTGATCAGGAATTCTACATTCCATCTGTGGATTTACTCACAGCTCAGGACTTACTGTCATTTGAACTGCTGGACATCAACATCGTGCAAGAGCTGGAGAGCGTGCCCAACAACACTCCTGCAGATGTGGCTCAGGGCACAGAATTAGAGGGAGTCCCAGCACAAGAGAAAGGAGAGGAGAACATCATTGGGCCTCAGTTTGTCAGTCCATCTGTTATCCGCTCTCTCACCCTTGAAGTGGCAGAGCATGGGACGCTTTGTGGGAAATGCCCAGCTAAAGTGGTGCGCCCAGCCCCGCAAGGTTCGATGTCACTTTGTGAGAGGAAATCAGAAAAAGTTTCAGAAACAGGAAGCATGTTAATATCTGCTCCAGCCCCACTGAAAGTAGAGATGGCACGAATCTCCAGCCCTGCTTCACCACAGACAGAAACCACTGAGATAGCTGCTCCCCTGCTGACGCTACCAACAGAACTCGTTAGCACAGATGAGGGTCACGAGTCTGACATCGAGCAGATCCTGGTGGAACCTGCAGGTGGAGATCTGGTAGAGGAGGGAGAGGAAGATGTGGATAAGAAAGAGCAAGTTAAGGACACAGAAGCAGCTAAGGAAACTCGCAGCAGAACTTCATCTGCATCTTCAGAAGACTACATCATCATCCTCCCTGATTGCTTTGACACCAGCCGTCCACTAGGAGAGTCCATGTACAGCTCAGCCCTGTCGCAGCCTGGAGAAGAGCCTGCAGAGGGAGACAAACTAGAATCAGTGGAGACCGCAGAGCTTCAGAGCCCCGTTGCTGCTGCTGTTAGTGTGGATGCTAATGACATGCTCTGTGCCTCCCAGACTCTGGACGCTGTGCCGCTCACCCCTGTGATTGTAGTGGCACCCCGACCCTCAGTCAAATCCTGCACAGAGACACAAGAGCAGACAGATAATGGACCAGAGGAGCAGGAGGGATGTGATCCTACAGAGCCAGGAGATAAGGAGAAAGCATCTGCCAAGTCTGAAACAGAAGAGCTCAGGGCCAATAGCATCACAGGTGGATTGGTGAAGGGTGCCCTGTCCGTGGCAGCATCTGCCTATAAAGCTCTTTTCACTGGTCAGACAGGGTCTGAGAAGATGGGCTTTGGTGACCGAGCACTAAATCAACGTCTGCTGCAGAAACACAACCGAAACCTGCTGGATGTGGTCAACGAACTCGTGCAGATGACCGACAATGACTGGTACACGACACGCTACTGAGATGCTGGTCAATTATTTTGTTTCTCTTATATCTGTTTTTTTTTTTTTCTCTCTCTTTCTATGTGCAATCAGCAGCCCATTCCA

Function

GO: NA

KEGG:

id description
K17987 NBR1; next to BRCA1 gene 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_04203202_04214241.mRNA True 2877 mRNA 0.53 20 4203202 4214325

Neighbor

gene id symbol gene type direction distance location
CI01000069_04165021_04170544 NA coding upstream 32647 4164128 ~ 4170555 (+)
CI01000069_04151875_04159107 NA coding upstream 44011 4151875 ~ 4159191 (+)
CI01000069_04143761_04147538 CD2BP2 coding upstream 55523 4143761 ~ 4147679 (+)
CI01000069_04113962_04124908 TBC1D10B coding upstream 77995 4113081 ~ 4125207 (+)
CI01000069_04089580_04103908 HSD3B7 coding upstream 98543 4089580 ~ 4104659 (+)
CI01000069_04230190_04235064 NA coding downstream 15044 4229369 ~ 4235081 (+)
CI01000069_04412903_04419976 NA coding downstream 196910 4411235 ~ 4422342 (+)
CI01000069_04425809_04438936 NA coding downstream 209618 4423943 ~ 4439161 (+)
CI01000069_04527086_04527715 NA coding downstream 312676 4527001 ~ 4527814 (+)
CI01000069_04556116_04558002 PYY, PYYA coding downstream 340944 4555269 ~ 4558480 (+)
G274669 NA non-coding upstream 11138 4184202 ~ 4192064 (+)
G274659 NA non-coding upstream 62035 4140880 ~ 4141167 (+)
G274671 NA non-coding upstream 62440 4139130 ~ 4140762 (+)
G274760 NA non-coding upstream 200979 3998983 ~ 4002223 (+)
G274748 NA non-coding upstream 270798 3932068 ~ 3932404 (+)
G274653 NA non-coding downstream 7097 4221422 ~ 4370572 (+)
G274775 NA non-coding downstream 43119 4257444 ~ 4306259 (+)
G274779 NA non-coding downstream 53890 4268215 ~ 4268822 (+)
G274781 NA non-coding downstream 55891 4270216 ~ 4272592 (+)
G274619 NA other upstream 69824 4129128 ~ 4133378 (+)
G274603 NA other upstream 399701 3800023 ~ 3803501 (+)
CI01000069_02894136_02894807 COX6A2 other upstream 1308314 2893418 ~ 2894947 (+)
G274270 NA other upstream 1522044 2672624 ~ 2681158 (+)
G274953 NA other downstream 710142 4924467 ~ 4926687 (+)
CI01000069_05046565_05048523 NA other downstream 831902 5045967 ~ 5049408 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025504 nbr1b coding NC_007114.7 CM002887.2 32933663 ~ 32952050 (+)