XLOC_025504 (nbr1b)


Basic Information

Item Value
gene id XLOC_025504
gene name nbr1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32933663 ~ 32952050 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050296
CCTTTTGAATGACGTCAGACATTTTCCTGTCAGCTGATGCGGTGGGCGTGTTTACGTCGCTGATGTAAACAGAAAGGACCATTTTGATCAGACAAATCTAGGAGGCACAGTAACTCATCAAAGCTTTTGTTTTCACCTATGCAACGCCTTAAATAGTACCCGCGCCATGGACTTTTACATTAACCTAAAGGTGACTTTTCGAGGGAATGCGAAGAGTTTCTTGCTGTCTGGCTCAGAGACGAAGAGTTGGGAGTCTATGGAGGCCATGGTGAAGAGGTCTTTTGGCCTGTGTAATTTACAACTAACATATTTCGATGAGGAAAACGAAGAGGTATCAGTCAACAGTCAATtGGAATATGAAGAAGCCCTAAAGAGTGCTGCCAGACAGGGGAACAGACTACAAATGAATGTGTATGAGACAAGGGGCAGTAGAGCCACAGTGCCAGGACCGGGCCCACCACCAGGGTCAGGGGTGGGCATAGCCCAGGTGAAACCTGGTACTGTTGGAGAACCCAAGAAGGGATTCAGGCCTCCTCAGCACTGCCCAACTTTGGCACAAGTGGTGAGTCGCAAAGTTCAGGCCGCAGTCCAAGAGGAAGGATTGGTAATTGTAAATGAACTTAAAGGTGGGAAGGCAGAGGACAAGACACCCCCAGCTTGGTTCACGTCATACATGGAAAAGTTTAAGGACCAGGTGGTTCGAGAGGCAGTAGAGAAGATTTGTAGGGAGTTCTCTGGACAGTGCTGTATCCATAAGCCAGTAGGAGCAGAGGCTCAGGTCCCGGAGGTCACCTCATCCACTCTTCCTGGGGCCCCAAGTTCAGCTCCAGCCTGCAGCAGCTGTCGGGGCCAGACCGCAGGCGGCGGATACCAATGCAGTGTGTGTACATCCTGCACTCTCTGTGAGCCTTGCAGCTTCTCACATGATCCAAGCCACAACCTTGTGAGAGCCAGAACTCCTCTGTCTATTCCTGAACACGGCTCGCCAGCACCAGACCACAGCAGGTTCTACAGAAGAGGTGACCGGAGCTTTCGTAAGGCTGAGAAGCAGCGTCTCAAAGCGGAGAAACGTCAGCTGAAGGCTGAGGTAAAGGAGATCAGAAAGCAGCTGAGGATGGAGAGGCGAGGCCTACAGTGGAGCACTGCTGGAGAAGGAAACTCTTCACCTGTCCTGCTGCAGCCACGAGCCACACAGGCAAACAGTCCTGATCGTCCTAAACGTCCATGTCCACTAGCTGTGCCAGCCATGACAGCTCTGCTGCTGGATGAAAACCTGCCTGACGGGTCACGTCTGCGTCCTGGGACCAAGTTTATCAAATACTGGAAAATGAAGAACAGTGGCAGAGTTTGCTGGGACTCAGAGACCAAGttgAAGTTCATGTGGGGGAACCTGGCAGTGGGCTCTGGAGAAAGATGGCGGGAGGTGCCAGTGCCCACACTACAGCCAGGTCAGGTGGGTGTGGTCAGTGTGGCTCTTTGTGCTCCGACGATAGAGGGCACTTACACGTCCCATTGGCGCCTAGCTCACAGAGGGGAGCAGTTTGGACCACGTGTTTGGTGCAGCATCGTTGTGGATCCACATGCACCTACAGCCATCTGTGCAGACGGGCTGCTGGTGTCTCCCTGTGTCACCCCACAGGAGAAGTCTTCCCGCACTCTTGAGAGGGAGGAGAAATGTCGGGCCTCAGGGGACCAGTTACTTCTGTCCGTAAACCAAGACTGCGATCAGGAATTCTACATTCCATCTGTGGACTTACTCACAGCTCAGGACTTACTGTCTTTCGAACTGCTGGACATCAACATTGTGCAAGAGCTGGAGAGCGTGCCCAACAATACTCCTGCGGACACTACTCCATGCATCTCACCTCTGCCCCATGATGGACCACTTCAGGAAAAACCAACACTGGGACTCATCCAAGAGGAAACTGAAGCCCAAGGTGTCAGCAACATCCACGATCAGGGTACAGAGTTGGAGGGAGTCCCAGCACAAGAGAAGGGAGAGGAGAACAGCATTGGGCCTCAGTTTGTCAGTCCATCTGTTATCCGCTCACTCACCCTTGAAGTGGCAGAGCGTGGGGCACTTTGTGGAAGATACCCAGCTAAAGTGGTGCGCCCTGCACCCCAGGGTTCGATGTCACTGTGCGAGAGACAATCAAAGAGCGTTTCAGAAACAGGACTAATATCTGCTCCAGCTCCACTGAAAGTAGAGGCACCTCTACTGTCTGACCCCACCTCACCACAGACAGAGACAACAGAGATCACTGTGCCCCTGCTAACACTTCCAGCACATCTTATCAGCACAGACGATGGTCACGAGTCTGACATCGAGCAGATCCTGCTGGAGCCTGCAGGTGGAGATGCGGTAGAGGAAGGGGAGGAGGAAGTGGATAAGAAAGAGCAGCTGAAGGACCCCGAAGCACCCAAAGAAGTCCGCAGCAGAACTTCATCAGCATCTTCAGAAGACTACATCATCATCCTGCCTGACTGCTTCGACACCAGTCGTCCGCTTGGAGAGTCCATGTACAGCTCAGCCCTGTCGCAGCCTGGAGATGAGCCTACTGAGGGGGAAAAACTGGAATCGGTGGAGACCCCAGAGCTCCAGaaccctgctgctgctgctagtGTGGATGCTAACGACATGCTCTGTGCCTCCCAGACTCTGGATGCTGTGCCGCTTACGCCTGTGATTGTAGTGGCACCCCGACCCTCAGTCAGATCCTGTGCAGAGACACAAGAGCAGATGGATGATGGAGCAAAGGAGCAGGAGGGCAGTGACCCGACAGAAGCAGGAGATAAAGAGAAAGattctGAACCAAATCAGCCTGACTCCGAGAACACTTTAGCATCAGCCAAGTCTGAAACAGAAGAGCTCAGGGCAAACAGCATCACAGGTGGATTAGTGAAGGGTGCCCTGTCTGTGGCAGCATCTGCCTATAAAGCTCTTTTCACTGGACAGACTGGCTCTGAAAAGCTCCCAGAGGATGCAGCTTCTCAAGACGCCATGATGGCGGTGCTGGTGGAGATGGGCTTCGGTGATCGAGCTCTAAACCAACGTCTACTGCAGAAACACAACCGCAACCTGCTGGACGTGGTAAACGAACTGGTGCAGATGACCGACAACGACTGGTACACGACACGCTACTGAGACGCTGGCCAATCATTTTGTTTCTCTTATATCGGTTTGATTTTGTTGCCTCTTTCTCTGTGCAATCAGCAGCCCATTCCATCATCCAGTCTCTTTCGTTCCATTTGGGTTGTAAAGATAGTTTGTGTGACTCTGTCTGCTCCAATGTGTAACGGATAATCGTTAGAGAAGCAGTTCATCACCATAATAACCGTGCTTGTTCAAGTATGTTGTTAGTGGGCATTAATGTTTGATCATGGGAAGCTTATAAACACTAATAGGTAACTCTTATTCCCAGACTCTCCAAGAGATATGCTTTGAAGCAACGGTGTACTTCACCACAAATCATTCGAATGATAAAGCTCTGCAATGTGACTGGATGTTTTTACACTTTATAGGGTTTTCCAGGTtaagaactgtttttttttttggaaaagtgCAATAGATTTGGCTTTTGTGTGAACTTTAATCGTCAGCCGAGACCAAATAGAGGAAAAACTTTGAGGCTTCTTGAGTTTAAAGTCTTCACTTTTGTCATCATATGAGATGACATTTAATTATTCCTTGCTGGAGAAGTCAATATTGAgtttagtgtatgaatgtgttttgttttcagtcaTTTTGAGCTGTTATTGCTTATAATACATGCGAGAATAATTATATTAAAGACCACTGATTCTATTCTAAAAGGTCCACAAAATAGGGCACACTCTGCACTTTGTGAATGGATTGCCATGCAAACATGTGAAAAACATCATGGCTAAGAGTGGCAATGCATTCAAGTAGATAAATGGATGGCGTTTTAATTTATGCTTTAAATAGTTAAAGACCGCAGAGGCAATCATGGCGTATTTAATTCCAATTTTAACTAGAGACACATCATAGTGAGACAAAATACAGCCTACtgttcattcaaaaaaaaaaaagaaatcacgcaaaagatatatatatattttgataaatgataGCTCTTGTATTTAGTGATGAGGAATGTATCTCTGCGCATTTATTCTTCAATGGGAGATTTTAAAACTACCTACTGTCTAGAGTGTGGAGGGCATTCCCTTACAATCATTTAGCGTCTCCTTGGTTTGCTTTAGTCGATGAAGCTCACGCAAGTGGTTCGTCCATGGGTTTAACTGAATAATCAGCTACTTTTACTTCCAGAGCTAGGGTTTAATTACGTTTAACACATTCCTTTAAAAAAGCTGTAGCTGGTATTGGTGCTTGCAGCGATCATTTAAGGTTCTGGGTGGAATTGTATGTATGGATTTTAAGCATAATCAGTGGAGACAGACGCACCTCACTCTGTGTTTGATGCCTGAATGGAGTATTCATATCGTCTCTGCATCTATGTACACATCTGTCTGTAATAAATATCCTTATAAGTCTGACCTTTGC

Function

symbol description
nbr1b Orthologous to human NBR1 (NBR1 autophagy cargo receptor).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-170215-1 Orthologous to human NBR1 (NBR1 autophagy cargo receptor).

Ensembl:

ensembl_id ENSDARG00000078772

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050296 True 4525 mRNA 0.48 21 32933663 32952050

Neighbor

gene id symbol gene type direction distance location
XLOC_025503 zgc:162613 coding upstream 63608 32862730 ~ 32870055 (+)
XLOC_025502 prr14 coding upstream 78292 32842794 ~ 32855371 (+)
XLOC_025501 cd2bp2 coding upstream 91280 32832042 ~ 32842383 (+)
XLOC_025500 tbc1d10b coding upstream 122301 32789605 ~ 32811362 (+)
XLOC_025499 hsd3b7 coding upstream 155413 32743946 ~ 32778250 (+)
XLOC_025505 NA coding downstream 24832 32976882 ~ 33029027 (+)
XLOC_025506 NA coding downstream 89257 33041307 ~ 33043550 (+)
XLOC_025507 NA coding downstream 91594 33043644 ~ 33045022 (+)
XLOC_025508 CR392003.1 coding downstream 93833 33045883 ~ 33048390 (+)
XLOC_025509 NA coding downstream 241318 33193368 ~ 33194715 (+)
XLOC_025429 BX649540.1 misc upstream 2684627 30248739 ~ 30249036 (+)
XLOC_025492 NA non-coding upstream 275227 32651697 ~ 32658436 (+)
XLOC_025487 FP236454.1 non-coding upstream 362292 32571309 ~ 32571371 (+)
XLOC_025481 CR936975.1 non-coding upstream 456378 32474661 ~ 32477285 (+)
XLOC_025475 NA non-coding upstream 586170 32346134 ~ 32347493 (+)
XLOC_025473 NA non-coding upstream 636660 32293773 ~ 32297003 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_04203202_04214241 NA coding CI01000069 null 4203202 ~ 4214325 (+)