XLOC_025473


Basic Information

Item Value
gene id XLOC_025473
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32293773 ~ 32297003 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052719
ATAACAggttgtttttgtattgtttattgttcttTATCACAGGCAATAATAATAGTGcactttcatttttttgtaattataacACAGACATTTATTTTCTCGTCATTATTTTTTTCCCTCCAATTTAATGACTTGCATTTCTTATGAAAAAAGTTCCTACTGTGCGCAATGGGAAAGAAAGAGTACAGCTTTACAATCTTAAGAGGAGTAATCAGTAATGACGACAAAGATAATCAATAATCATCAGGTGAATATAGAATGGATAAAGAATGAAGATAtgagtaatattttctgtttacAATGAACAGAGATGAAGGGGGAGGGGGTGAGCATACACTGGGGACAGGCAGGGCGTATGTATATAATGAGAGACGAGGGAAGGAGATTGGTCTAAAGTATAATTCTATGATCGGGAGCGGGACGAGGTATATAATGTATGGTAAATAAGTGAAGACTAACGATACATATGAAATGTGATACGTGTGCTGTATGTGGAGGCGAGTAACTAAAACAGAATCTCATTCAGTGCATAATGTGAAAGGGAGGGGGAAGGGGGACGGGGACACACAGAGCGGGAGAGCGTCATGATCAGAGAAAGTGTGTGGAGTGTATTTCACATTCACTCAGAGCTGGACAGACAGTCTGTATTTGCACACTCCCAGACTTACCCTGCCTGAGAACTAACAGAACTGAACACGCAAACATCGTCAGGGTTTTGCTCTGGCGTTTCCTCTGCCTCATGACCGGGCATATTTGAGAGCGCACGTGCTTGACCGTTTGGTAGATGTGGATTTAAGGCATTCATAGTGTACTAAAACAAGGACGTACTCCTTATTATATCTGCTCCTAAACATTCAACAGTAGTGAAGAAAAGTCAATGTGCTATTCGAAATCAATTTAGGAAGACGCAGGAGCTGCTGGATGACAAAACAGTCCTCGTTGTCGTTTCCGCTATGCTATTTTTGGGTAGAAGTTAACGTGATGGCTGCAGGATGGTGGCAGAGGGAGGACCAGAGCAAAACCTTGCTTTGCATTTAGTGCTCTTTGCGTCAGGAAAAGAGTGGACTGGAGggtgaaagagagagaggcagGGGGGCGCTTTACGGTCAGATTCTGGGCTTCAGGGCCAAGACTCATTGGAGAAAGAGCTTTTAAGACAGTGCATTCCAGTTTCAAAGTCCAGTTatcattcattttgtttcataTTGTCAGTTTTGAGTcttcttgtgtgtgtgcgtgtgtgtgcatgtgtgtgaaaaagACAGAATACTGCTCGCGTTTCGTACGAGGGGCTGGCCTGGTACATACGAGTCCGAAACTTTGGGCTTTTGTCTGGGTAACATTCTCAAAGATGGAGAGCGAACATGGAGGGCTTCATTCTCGTTCCCCGTTTGTTCCTCGTCTTCCATAAGGTTCACTTCAGTCTTTAGGTTTACGTGCATCCTGGAGGGCTTTAAAATGTTCTCCCTGTGGGAGACATCCAAGGCATGGAGTCATTGCTTGGTTGATTTTTCATTACTCTCCAGTTTTTCTCCTTTGTGAGTTGGCTTCTGTTTTTATGTGatatgaaatgaaaatgagaCAGGAAACTACTGAAATGTCTTTTAGAGGACTTTTGCAGCATTGTTAGAAGATATTTGGGAACAAACAGAAATGGGTCGTTTTTTTAAACGATTTTCTAAATTGTAACCTGTGCGATTTTTATTTTACCAGCCTGAACATTTAGCAAACAatccatcaaataaataaataaataaataaataaataaataaataaataaataaataaataaataacgtgtttttaaatcaataaatagttcaacatttctatttttgttttttttcacattcactttttttccatttactcAATGGAAACAAGTTATTTCagaatataacaaaaatataatctAAACAAGAAATGGAAAAACAAATGATGGTTAAGATGGCGAAGgcatattttttcttgtctaattGTAGGACACAAGAGCACGACAGGCTATTTCATTCCTCTTGTTCGGTCTGTGTTTGAACATGTCATAGGAAATCTCTAAGCCTCTGTGCCTGTTTAGTGAGTGGGGTGGATCTGGTATAGTCTGAGAACTGCCATGACTTACAACAGCCCAGTTTTGACAACATTCTCCAAGTGTAGCTTCCGGTGGCCATCTTTCCACTGCATATCTTTCAGTGACCAATTTTTAGGATCTACAACAACACAGGCTATATCTTCAACACTTAACACACATCCTCAGATCATGAGGGTATAGTCATGTAAGACTATAATTGCATTTTGTGAtacaaaatttaataataaaaaaaagttttagaaatCCTTTTTTTGTGCTCCAAGTGGTGTTAAGAATGAAGAAGGTCCTGCTTTTTGCCATTCTGTTTGCTTTTCTCTACCTTAAGCAGCTTATTCTGATTTTTCTGATGATCATTGCTTATAATGACGATGAtggagatgaagatgatgatgataagtTTGAGAGACATTCTTTTCTGTCCCATGGTTTGTCTAGTTTGTTGCCATTAGATCACTTGAGCATTGATCCTTCTTTGTAGTGAACCGAATAATTTGTTGCTGGGGTGTATATTTCACGTTTGTAAATGCTTAGAATCGGAAAAGcgatattataattttttcttctgaCGATGACTTGCATGTAAGAACACTTCCGTGTAGACAGACTCCTGACTTGTTACAGTTGGATCCCAGGGTGTGATGTGAAATTCAGGGCTAAGTTTACCTGTCGTTGTGTGTTGTGCAGATGGACCATGAGCGACTCGTGTCAACCCCTTTACAGCTTGTCTGATTAGTTCACTTAGGGTTGAGACTGGGTCCCATTTGAGGAAAGGAGGCGAGTTTTATCTTTGCCAGATCCCTTCCTTTGTAGTACACTCACGCTACCACCAATACTGCTCCCTTCTCCTCGATCGGCGCGCTCTGCCCGCTCCCCGCGATCACCTCCGCCCTCCGAGCGACGAGAGTTCTGACGGGTCGGTGTGCTGGGTGGACGGGACGAAAGCCCATTCTTCTCATCTGCAAGGAGAAAATAACAGGAACCATCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052719 True 3076 lncRNA 0.40 2 32293773 32297003

Neighbor

gene id symbol gene type direction distance location
XLOC_025472 syt5a coding upstream 142606 32142382 ~ 32151167 (+)
XLOC_025471 fthl27 coding upstream 153327 32139666 ~ 32140446 (+)
XLOC_025470 BX511021.1 coding upstream 157545 32135037 ~ 32136228 (+)
XLOC_025469 fthl31 coding upstream 163318 32129632 ~ 32130455 (+)
XLOC_025468 fthl29 coding upstream 166190 32125452 ~ 32127583 (+)
XLOC_025474 prl coding downstream 44914 32341917 ~ 32345900 (+)
XLOC_025475 NA coding downstream 49131 32346134 ~ 32347493 (+)
XLOC_025476 ap2a1 coding downstream 68808 32365811 ~ 32401481 (+)
XLOC_025477 si:ch211-195b15.8 coding downstream 106755 32403758 ~ 32407192 (+)
XLOC_025478 rras coding downstream 113743 32410746 ~ 32416121 (+)
XLOC_025429 BX649540.1 misc upstream 2044737 30248739 ~ 30249036 (+)
XLOC_025458 NA non-coding upstream 374642 31918162 ~ 31919131 (+)
XLOC_025455 BX324157.1 non-coding upstream 505136 31788521 ~ 31788637 (+)
XLOC_025449 NA non-coding upstream 1054210 31231809 ~ 31239563 (+)
XLOC_025447 NA non-coding upstream 1122899 31169219 ~ 31170874 (+)
XLOC_025446 NA non-coding upstream 1188120 31097933 ~ 31105653 (+)
XLOC_025481 CR936975.1 non-coding downstream 177658 32474661 ~ 32477285 (+)
XLOC_025487 FP236454.1 non-coding downstream 274306 32571309 ~ 32571371 (+)
XLOC_025492 NA non-coding downstream 354694 32651697 ~ 32658436 (+)
XLOC_025505 NA non-coding downstream 679879 32976882 ~ 33029027 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_03768812_03787588 BRSK1 misc CI01000069 null 3765673 ~ 3787588 (-)
mexican tetra (Astyanax mexicanus) G290379 NA non-coding NW_019172781.1 APWO02002379.1 216828 ~ 219987 (-)