XLOC_025468 (fthl29)


Basic Information

Item Value
gene id XLOC_025468
gene name fthl29
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32125452 ~ 32127583 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050215
ATGGAGACTTGTCAGATCCGCCAGAACTATGACAGCGACTGCGAGGCTTTGATCAACAAGATGATCAATCTGGAGCTTTACGCTGGATACACCTACACCTCCATGGCTCACTACTTCAAACGGGACGATGTGGCCCTTCCTGGATTTGCCAAGTTCTTCAAGAATAACAGTGAGGAGGAGCGCGAACATGCTGAGAAATTCATGGAGTTCCAGAACAAGAGAGGTGGACGCATTGTCCTTCAGGACATTAAGAAACCTGGTCGTGATGTGTGGGACAATGGACTGACTGCTATGCAGTGTGCTCTTCAGCTGGAGAAGAGCGTAAACCAGGCTCTGCTGGACCTGCATAAAGTCGCCTCTCAGAAGGGAGACCCTCATCTGTGTGATTTGCTGGAGTCTCACTACCTGAATGAGCAGGTTGAGGCCATTAAGAAGCTTGGTGACCACATCACTAACCTCTCCAAGATGGATGCTGGAAATAACCGGATGGCGGAGTACCTGTTCGACAAGCACACCCTGGACAGCTAAATGCAGACATCATCTGCATCCTCCAAAAAGGCCCTCTATAATATTTTCTTAATCTACTAGTTCATTATACTTAAGtaataacacaaaaaaagttttaaatcctgttaatgttgttttagtcaattCCATGCTTTCCTTCTAAATGGATACTAATTGATTTTGGGGAATTTGATTAATAAACCTCTCGGGTTGGATtgaattgtctttttttatttttttaaaatgatggtGATTGAGTCATATCtaaacacatcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtgtatgtatatgtatatatagtataaagtTATTATTAGTCATATATTTATTGACTTTAAACACAGTGGGTGAATGCTCCTGACTGGCCttcctgcaatttttttttttaaatgtatatgtaaccccgccagtccaaCCCGCTCCGAGCAGGGATCGAACCGGCAGCtcttgcatgggagtcggttgctctaacaaggaggtttAAGACCATGCCCAGCAAACAATTTAgtatttaatagatgtctaacaggctaaatttgggctgtcaaagAAATTCTAATTGACATCTAAGAACAGCTAAAAActaatagacagattagaccagggatgtccaaactcggtcctggagggccagtgtcctgctgagtttagctccaacttgcttcaacacacctgttaGAAAGTTTCTAGTGTgtgtagtaagagcttgattagctggttcaggtgtgtttgattgaggttggagctaaactccactggccctccaggaccgagtttgaacacccctggattagacagactttatatgtgtagtcattaatttctatttatttgagGACTATTCTATTTTTAGCCTATTCTTAGTAGTTTATTAGactttcactgacagcccaaatttagccttgttttagccgaaacgactatgtttagacatctattaggcaATCTactagacatcttttaaaaacaaaaaatgcttgctgggtggCCTCAAGCATCTGTCGctaaagcacctttagaggtcagaggagtgaggtttacctgcatagcactttatGGCATCTGTTAATGTACATATAAAAATGA

Function

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0006826 iron ion transport biological_process
GO:0046872 metal ion binding molecular_function
GO:0008199 ferric iron binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080722-16 No description available

Ensembl:

ensembl_id ENSDARG00000113977

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050215 True 1682 mRNA 0.42 4 32125452 32127583

Neighbor

gene id symbol gene type direction distance location
XLOC_025467 fthl31 coding upstream 5098 32118670 ~ 32120354 (+)
XLOC_025466 fthl30 coding upstream 11804 32112004 ~ 32113648 (+)
XLOC_025465 fthl28 coding upstream 18780 32105175 ~ 32106672 (+)
XLOC_025464 fthl27 coding upstream 24453 32099507 ~ 32100999 (+)
XLOC_025463 aldh16a1 coding upstream 26937 32080403 ~ 32098515 (+)
XLOC_025469 fthl31 coding downstream 2049 32129632 ~ 32130455 (+)
XLOC_025470 BX511021.1 coding downstream 7454 32135037 ~ 32136228 (+)
XLOC_025471 fthl27 coding downstream 12083 32139666 ~ 32140446 (+)
XLOC_025472 syt5a coding downstream 14799 32142382 ~ 32151167 (+)
XLOC_025473 NA coding downstream 166190 32293773 ~ 32297003 (+)
XLOC_025429 BX649540.1 misc upstream 1876416 30248739 ~ 30249036 (+)
XLOC_025458 NA non-coding upstream 206321 31918162 ~ 31919131 (+)
XLOC_025455 BX324157.1 non-coding upstream 336815 31788521 ~ 31788637 (+)
XLOC_025449 NA non-coding upstream 885889 31231809 ~ 31239563 (+)
XLOC_025447 NA non-coding upstream 954578 31169219 ~ 31170874 (+)
XLOC_025446 NA non-coding upstream 1019799 31097933 ~ 31105653 (+)
XLOC_025475 NA non-coding downstream 218551 32346134 ~ 32347493 (+)
XLOC_025481 CR936975.1 non-coding downstream 347078 32474661 ~ 32477285 (+)
XLOC_025487 FP236454.1 non-coding downstream 443726 32571309 ~ 32571371 (+)
XLOC_025492 NA non-coding downstream 524114 32651697 ~ 32658436 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00006982 NA coding CM030123.1 CM030123.1 55592 ~ 57428 (-)