XLOC_025464 (fthl27)


Basic Information

Item Value
gene id XLOC_025464
gene name fthl27
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32099507 ~ 32100999 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050207
AGTTTgctattaataatgaaaaaaggAAACACGTTGAAATCTCATCTCTATTGTCTAGAATGCCTACTGACTGTCAGCTGACTCTTTTACCACTTCCTCGTTCAGCTCgctgtttgattggctggttTCAGTTCCACTGACGTATCATGTTGCGAGCGTATAAAAGATGAACGCGCTCCTTCATTTCACTCACAGCTTCAGGAAGATCTGGAGAGGTTCTTGCTTCAACAGTGATTGAACGGAACTTCGATCTCGCTTGAATTTCACTTCGAGGACCTgacatttcatatttattattttttaccgtCATTTtgataacaaaacaacaaaaatcatcTGAAATGGATTCCCAGGTTCGCCAAAACTACGACCGCGACTGCGAGGCTTTGATCAACAAGATGATCAATCTGGAGCTTTACGCTGGATACACCTACACCTCCATGGCTTTCTACTTTGACCGGGACGATGTGGCTCTTCCTGGATTTGCCAAGTTCTTCAAGAAGAACAGTGAGGAGGAGCGCGAACATGCTGAGAAATTCATGGAGTTCCAGAACAAGAGAGGTGGACGCATTGTCCTTCAGGACATCAAGAAACCTGAGCGCGATGAGTGGGACAATGGGCTGACTGCTATGCAGTGTGCTCTTCAGCTGGAGAAGAACGTCAACCAGGCTCTGCTGGACCTGCATAAAGTCGCCTCTCAAAAGGGAGACCCTCATCTGTGTGATTTCCTGGAGTCTCACTACCTGAATGAGCAGGTTGAGGCCATCAAGAAGCTTGGTGACCACATCACTAACCTCTCCAAGATGGATGCTGGAAATAACAGGATGGCGGAGTACCTGTTTGACAAGCACACCCTGGACAGCTAAACTCGGATCATCTGCAGCCACTAAAGCCTCCAGTTGTACTCTATGCATAAATCATGAAACCATGTTGTCCCGCAGTAAAATCTTTGAGGTTAACATTTAGAGGCTTCATGTTTAAGATCTGCCTTGTTAAATCAGTCATCTAGCTGATGCCTTGCTTGTTGAATGTGCACTGACTTGTTGGTCACCTTGTGAATCTGATGAATAAACATTTCTGGCTGAA
>TCONS_00052718
CAGCTTCAGGAAGATCTGGAGAGGTTCTTGCTTCAACAGTGATTGAACGGAACTTCGATCTCGCTTGAATTTCACTTCGAGGACCTgacatttcatatttattattttttaccgtCATTTtgataacaaaacaacaaaaatcatcTGAAATGGATTCCCAGGTTCGCCAAAACTACGACCGCGACTGCGAGGCTTTGATCAACAAGATGATCAATCTGGAGCTTTACGCTGGATACACCTACACCTCCATGGCTTTCTACTTTGACCGGGACGATGTGGCTCTTCCTGGATTTGCCAAGTTCTTCAAGAAGAACAGTGAGGAGGAGCGCGAACATGCTGAGAAATTCATGGAGTTCCAGAACAAGAGAGGTGGACGCATTGTCCTTCAGGACATCAAGAAACCTGAGCGCGATGAGTGGGACAATGGGCTGACTGCTATGCAGTGTGCTCTTCAGCTGGAGAAGAACGTCAACCAGGCTCTGCTGGACCTGCATAAAGTCGCCTCTCAAAAGGGAGACCCTCATGTAAGTTAATAAAGTCCATAATATACATTGGTCCTTAATACTTTAATTAGGTGTCTTAACATCTTCTCTGATGTCTTGTTCATCAGCTGTGTGATT
>TCONS_00050208
CAGCTTCAGGAAGATCTGGAGAGGTTCTTGCTTCAACAGTGATTGAACGGAACTTCGATCTCGCTTGAATTTCACTTCGAGGACCTgacatttcatatttattattttttaccgtCATTTtgataacaaaacaacaaaaatcatcTGAAATGGATTCCCAGGTTCGCCAAAACTACGACCGCGACTGCGAGGCTTTGATCAACAAGATGATCAATCTGGAGCTTTACGCTGGATACACCTACACCTCCATGGCAAGTATTgatgaaattaataaaacacatttcgAAGTTTTTTCTTGGTATTGATGATGTACAtacttttataatttaaatattaacgtTACTCTTTCTCTAACGTTGTATTTCACGACGCCATTAGCTGTAAAAGATCACGTTGCTCTGCGTGTTTATTAAATTTTCGCAATCCATATTTCAACCAACAGGCTTTCTACTTTGACCGGGACGATGTGGCTCTTCCTGGATTTGCCAAGTTCTTCAAGAAGAACAGTGAGGAGGAGCGCGAACATGCTGAGAAATTCATGGAGTTCCAGAACAAGAGAGGTGGACGCATTGTCCTTCAGGACATCAAGAAACCTGAGCGCGATGAGTGGGACAATGGGCTGACTGCTATGCAGTGTGCTCTTCAGCTGGAGAAGAACGTCAACCAGGCTCTGCTGGACCTGCATAAAGTCGCCTCTCAAAAGGGAGACCCTCATGTAAGTTAATAAAGTCCATAATATACATTGGTCCTTAATACTTTAATTAGGTGTCTTAACATCTTCTCTGATGTCTTGTTCATCAGCTGTGTGATT
>TCONS_00050209
GCTTCAGGAAGATCTGGAGAGGTTCTTGCTTCAACAGTGATTGAACGGAACTTCGATCTCGCTTGAATTTCACTTCGAGGACCTgacatttcatatttattattttttaccgtCATTTtgataacaaaacaacaaaaatcatcTGAAATGGATTCCCAGGTTCGCCAAAACTACGACCGCGACTGCGAGGCTTTGATCAACAAGATGATCAATCTGGAGCTTTACGCTGGATACACCTACACCTCCATGGCTTTCTACTTTGACCGGGACGATGTGGCTCTTCCTGGATTTGCCAAGTTCTTCAAGAAGAACAGTGAGGAGGAGCGCGAACATGCTGAGAAATTCATGGAGTTCCAGAACAAGAGAGGTGGACGCATTGTCCTTCAGGACATCAAGGTGAGCATATTTCTTCTTTCCTGTTTGCGTTTTAATAAGAAAAACTTTTGTATAGATGCAATCATATATAACTGCTCAAAGTGGAGGGGGGAAGGGCGTCACGTGCTCACTGACGTGTTTGTTTTTCCAGAAACCTGAGCGCGATGAGTGGGACAATGGGCTGACTGCTATGCAGTGTGCTCTTCAGCTGGAGAAGAACGTCAACCAGGCTCTGCTGGACCTGCATAAAGTCGCCTCTCAAAAGGGAGACCCTCATGTAAGTTAATAAAGTCCATAATATACATTGGTCCTTAATACTTTAATTAGGTGTCTTAACATCTTCTCTGATGTCTTGTT

Function

symbol description
fthl27 Predicted to enable ferric iron binding activity and ferrous iron binding activity. Predicted to be involved in intracellular sequestering of iron ion. Predicted to act upstream of or within cellular iron ion homeostasis and iron ion transport. Predicted to be active in cytoplasm. Is expressed in several structures, including Kupffer's vesicle; hypochord; mucus secreting cell; segmental plate; and sensory system.

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0006880 intracellular sequestering of iron ion biological_process
GO:0006826 iron ion transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0005506 iron ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008198 ferrous iron binding molecular_function
GO:0008199 ferric iron binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-72 Predicted to enable ferric iron binding activity and ferrous iron binding activity. Predicted to be involved in intracellular sequestering of iron ion. Predicted to act upstream of or within cellular iron ion homeostasis and iron ion transport. Predicted to be active in cytoplasm. Is expressed in several structures, including Kupffer's vesicle; hypochord; mucus secreting cell; segmental plate; and sensory system.

Ensembl:

ensembl_id ENSDARG00000031776

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050207 False 1086 mRNA 0.45 4 32099507 32100999
TCONS_00052718 False 620 lncRNA 0.44 3 32099699 32100639
TCONS_00050208 False 811 lncRNA 0.41 2 32099699 32100639
TCONS_00050209 True 732 lncRNA 0.44 2 32099701 32100623

Neighbor

gene id symbol gene type direction distance location
XLOC_025463 aldh16a1 coding upstream 992 32080403 ~ 32098515 (+)
XLOC_025462 kcnc3a coding upstream 45578 31953145 ~ 32053929 (+)
XLOC_025461 zgc:193811 coding upstream 148212 31945604 ~ 31951295 (+)
XLOC_025460 lin7b coding upstream 154798 31933893 ~ 31944709 (+)
XLOC_025459 snrnp70 coding upstream 165733 31925067 ~ 31933774 (+)
XLOC_025465 fthl28 coding downstream 4176 32105175 ~ 32106672 (+)
XLOC_025466 fthl30 coding downstream 11005 32112004 ~ 32113648 (+)
XLOC_025467 fthl31 coding downstream 17671 32118670 ~ 32120354 (+)
XLOC_025468 fthl29 coding downstream 24453 32125452 ~ 32127583 (+)
XLOC_025469 fthl31 coding downstream 28633 32129632 ~ 32130455 (+)
XLOC_025429 BX649540.1 misc upstream 1850471 30248739 ~ 30249036 (+)
XLOC_025458 NA non-coding upstream 180376 31918162 ~ 31919131 (+)
XLOC_025455 BX324157.1 non-coding upstream 310870 31788521 ~ 31788637 (+)
XLOC_025449 NA non-coding upstream 859944 31231809 ~ 31239563 (+)
XLOC_025447 NA non-coding upstream 928633 31169219 ~ 31170874 (+)
XLOC_025446 NA non-coding upstream 993854 31097933 ~ 31105653 (+)
XLOC_025473 NA non-coding downstream 192774 32293773 ~ 32297003 (+)
XLOC_025475 NA non-coding downstream 245135 32346134 ~ 32347493 (+)
XLOC_025481 CR936975.1 non-coding downstream 373662 32474661 ~ 32477285 (+)
XLOC_025487 FP236454.1 non-coding downstream 470310 32571309 ~ 32571371 (+)
XLOC_025492 NA non-coding downstream 550698 32651697 ~ 32658436 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G108943 NA non-coding NC_048566.1 CM023220.2 6434037 ~ 6436005 (+)
eurasian perch (Perca fluviatilis) G92083 NA non-coding NC_053120.1 CM020917.1 1578519 ~ 1615013 (+)
bowfin (Amia calva) G99286 NA unknown CM030132.1 CM030132.1 14481194 ~ 14482908 (-)