G108943


Basic Information

Item Value
gene id G108943
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6434037 ~ 6436005 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123957
GGCTCATCCGCCTCTTTCAAGTATTGTTTCAAAGCAGGAACCAGGAGTTCTGCACTAGGGctggatcccaaatggcaccctattccccagttagtgcactacctctgaccagggctcataggggtgccacttgggacacatTATATTATTTATCCTTCTTCCTCTTCTGTAGACTTTAAACAACCAACTAAACATGAAGACCAGACAGGTCCTCTGGGAGGTTTATCTATATCTGTTCTACAGCCATATATCCAAAGTCACCACCTAGTCCTCTGTTAGGTAGTGTTAACATCACCTAGTCCTCTGTTAGGTAGTGTTAACATCACCTAGTCCTCTGTTAGGTAGTGTTAACATCACCTAGTCCTCTGTTAGGTAGTGTTAACATCACCTAGTCCTCTGTTAGGTAGTGTTAATATCACCTAGTCCTCTGTTAGGTAGTGTTAACATCATCACCTAGTCCTCTGTTAGGTAGTGGTAACATCATCACCTAGTTCTCTGTTAGGTAGTGTTAACATCACCTAGTCCTCTGTTAGGTAGTGTTAACATCACCTAGTCCTCTGTTAGGTAGTGTTAACATCACCACCTAGTCCTCTGTTAGGTAGTGTTAACATCACCTAGTCCTCTGTTAGGTAGTGTTAACACCACCTAGTCCTCTGTTAGGTAGTGTTAACATCACCTAGTCCTCTGTTAGGTAGTGGTAACAtcagggaggagggaaagaggagacaTGAAAGTGTGATGCGGTTGTTTCACTCCTTACTTTGGTACGCAAATGTGTTATGTTGTTTGAGGGTCAGAggatgtgtgtgcatgcttgcttgagtgtgtgtatgtgcgtgtgtgttagagagagagagtgtgtgtgtgtgtgtgtaagagagag
>TU123958
GTTAACATCACCTTGTCCTCTATTAGGTAGTGTTAACATCATCACCTAGTCCTCTGTTAGGTAGTGTTAACATCACCTAGTCCTCTGTTAGGTAGTGCACCACCTAGTCCTCTGTTAGGTAGTGTTAACATCCCCTAGTCCTCTGTTAGGTAGTGGTAACATCATCACCTAGTCCTCTGTTAGGTAGTGTTAACATCCCCTAGTCCTCTGTTAGGTAGTGGTAACATCATCCCCTAGTCCTATGTTAGGTAGTGTTAACACCACCTAGTCCTCTGTTAGGTAGTGTTAACATCACCTAGTCCTCTGTTAGGTAGTGGTAACAtcagggaggagggaaagaggagacaTGAAAGTGTGATGCGGTTGTTTCACTCCTTACTTTGGTACGCAAATGTGTTATGTTGTTTGAGGGTCAGAggatgtgtgtgcatgcttgcttgagtgtgtgtatgtgcgtgtgtgttagagagagagagtgtgtgtgtgtgtgtgtaagagagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123957 False 883 lncRNA 0.44 2 6434037 6436005
TU123958 True 502 lncRNA 0.45 2 6435086 6436005

Neighbor

gene id symbol gene type direction distance location
trip13 LOC106590995 coding upstream 44249 6378373 ~ 6389788 (+)
cep72 LOC106573558 coding upstream 121438 6286558 ~ 6312599 (+)
ccdc12 ccd12 coding upstream 183995 6231369 ~ 6250042 (+)
LOC118937376 NA coding upstream 340097 6092079 ~ 6093940 (+)
setd2 LOC106593284 coding upstream 384536 6002992 ~ 6049501 (+)
zgc:158766 LOC106590969 coding downstream 109363 6545368 ~ 6629469 (+)
LOC118937387 NA coding downstream 183105 6619110 ~ 6621596 (+)
LOC110505995 LOC106573077 coding downstream 209211 6645216 ~ 6649794 (+)
ptdss1a LOC106595791 coding downstream 217197 6653202 ~ 6684816 (+)
LOC110505984 LOC106574154 coding downstream 249895 6685900 ~ 6688012 (+)
G108911 NA non-coding upstream 47317 6386330 ~ 6386720 (+)
G108897 NA non-coding upstream 69248 6362904 ~ 6364789 (+)
G108888 NA non-coding upstream 89514 6334097 ~ 6344523 (+)
G108887 NA non-coding upstream 100778 6332029 ~ 6333259 (+)
G108873 NA non-coding upstream 115777 6314599 ~ 6318260 (+)
G108951 NA non-coding downstream 28751 6464756 ~ 6471975 (+)
G108991 NA non-coding downstream 120036 6556041 ~ 6623583 (+)
G108994 NA non-coding downstream 122890 6558895 ~ 6559507 (+)
G109003 NA non-coding downstream 135613 6571618 ~ 6572130 (+)
G109011 NA non-coding downstream 152159 6588164 ~ 6588628 (+)
G108874 LOC106573552 other upstream 148097 6282071 ~ 6285940 (+)
G108805 LOC106594197 other upstream 234696 6151712 ~ 6199341 (+)
G108775 LOC106606109 other upstream 375702 6056996 ~ 6058335 (+)
LOC110505679 LOC106579367 other upstream 431843 5976200 ~ 6002265 (+)
LOC110505637 LOC106573538 other upstream 475224 5953886 ~ 5958813 (+)
G109020 NA other downstream 197073 6633078 ~ 6633913 (+)
rbm24b LOC106596654 other downstream 420081 6855864 ~ 6868976 (+)
malsu1 malsu1 other downstream 472542 6908511 ~ 6911256 (+)
LOC110535156 LOC106606167 other downstream 505511 6941465 ~ 6944043 (+)
G109821 NA other downstream 699242 7135247 ~ 7140979 (+)

Expression


Co-expression Network