G108888


Basic Information

Item Value
gene id G108888
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6334097 ~ 6344523 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123884
TACCTTAGTTCAGCCAGCTTTGGGTCAGCCAGCTTTATTGGGTCAGCCATGGCGCTGCAGTAGTTGGTTTCCCCCTCTACACTGCTTGGAGTAGGTGACTCTCTTAGTTTCTTTGTACTGATCTCAATCCTTCTCCAATCCACTGTTCTTTGTTGTCAATTCCACAAAATCATAACTGCATGTCGAGGAATGTTGGAGGTTGAAAGAGCATTGCCAACACTATATTCTCCCGCTATATAGAATCTCAAATGCCTGTCTTGCTGTTCGCCTCCCAGAAAGAAATGCGGGGAGAAATCCAGGCCACTGATTGGCTGCAGCACTCCTACCACTCGTGTAAACATCAATCTATTCTCATGAAGGTGATGCAGGACGTTGTTTTGTTTTATCCATAATAGGATAAGTGAATTCCTTCCGTTCCGTGGGAATCTCTGTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123884 True 433 lncRNA 0.45 2 6334097 6344523

Neighbor

gene id symbol gene type direction distance location
cep72 LOC106573558 coding upstream 21498 6286558 ~ 6312599 (+)
ccdc12 ccd12 coding upstream 84055 6231369 ~ 6250042 (+)
LOC118937376 NA coding upstream 240157 6092079 ~ 6093940 (+)
setd2 LOC106593284 coding upstream 284596 6002992 ~ 6049501 (+)
LOC118937375 NA coding upstream 354207 5978266 ~ 5979890 (+)
trip13 LOC106590995 coding downstream 33850 6378373 ~ 6389788 (+)
nkd2b LOC106574162 coding downstream 58153 6402676 ~ 6499698 (+)
zgc:158766 LOC106590969 coding downstream 200845 6545368 ~ 6629469 (+)
LOC118937387 NA coding downstream 274587 6619110 ~ 6621596 (+)
LOC110505995 LOC106573077 coding downstream 300693 6645216 ~ 6649794 (+)
G108887 NA non-coding upstream 838 6332029 ~ 6333259 (+)
G108873 NA non-coding upstream 15837 6314599 ~ 6318260 (+)
G108876 NA non-coding upstream 52199 6281550 ~ 6281898 (+)
G108872 NA non-coding upstream 54058 6279261 ~ 6280039 (+)
G108861 NA non-coding upstream 67615 6265941 ~ 6266482 (+)
G108897 NA non-coding downstream 18381 6362904 ~ 6364789 (+)
G108911 NA non-coding downstream 41807 6386330 ~ 6386720 (+)
G108943 NA non-coding downstream 89514 6434037 ~ 6436005 (+)
G108951 NA non-coding downstream 120233 6464756 ~ 6471975 (+)
G108991 NA non-coding downstream 211518 6556041 ~ 6623583 (+)
G108874 LOC106573552 other upstream 48157 6282071 ~ 6285940 (+)
G108805 LOC106594197 other upstream 134756 6151712 ~ 6199341 (+)
G108775 LOC106606109 other upstream 275762 6056996 ~ 6058335 (+)
LOC110505679 LOC106579367 other upstream 331903 5976200 ~ 6002265 (+)
LOC110505637 LOC106573538 other upstream 375284 5953886 ~ 5958813 (+)
G109020 NA other downstream 288555 6633078 ~ 6633913 (+)
rbm24b LOC106596654 other downstream 511563 6855864 ~ 6868976 (+)
malsu1 malsu1 other downstream 564024 6908511 ~ 6911256 (+)
LOC110535156 LOC106606167 other downstream 596993 6941465 ~ 6944043 (+)
G109821 NA other downstream 790724 7135247 ~ 7140979 (+)

Expression


Co-expression Network