XLOC_025449


Basic Information

Item Value
gene id XLOC_025449
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31231809 ~ 31239563 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052715
CTCTTACTCTCGCCCCACTGTCTCACTTCCCTTCCAGAGCAACATGCCACTCTCTGGATCCAGATTTActcaatatatttatacatttatgaaaaaaaatatctgtaaatgtgACTCAAGTAATGAATTCAGGTCTCTACGGGCTTGGTTCCTCCATCCATTcctccaaaacaaacaaacaaaaaataaataaatgtacttgGTGATGTTGAGTCAAACACAAAACATCCCCTTGTCTTTctccctccctctttctctccctctcactCTCTCAATCTATCTATCCCTCCTCTTCCTCCCCATCCTCTTCAATCCCACCCACCCAGACACTCCTAATCTCCCTCTCCTTCCTGTCTCCTCGCTCTCTCTAGTCTTCAAAAATGACACGCAAGACAGTCAGTTTCTCCTGTCTTCTCCTCTCCCAGGAGAGAGCagcgccctcctcttcctcctcctcttgaTCAGGGTTTCTTTCAGAGACCAGTGACTCATCCAGGTTTGCAGAAGCACTGATGGATATCAAATCTGTACTGCGCGTCTCTGTCCCCGCCCGTTTTTATAGCAGCACCTCGCCGGCTGCAGACACTTGTTGCTCTTTGCTGAAATACACCGAGAGGGAAGGGTTTACGAGAGCTGCGACCACCTGCTGCCGCCCTGTGAACAAGGCAACACCAGAAATGAAGCTTAAAGCATTTCCCTATAAAGCTGGTGAAACTAATTTGCCTGACATGAAGGACCATGAACTCTTTGAGAACAGCTTAATGGATGAGAAAAGAGGCTGACAAATTAACCTTGTGGCTATCAGTACCTGCAAGATATCAATGAGGAATTCAGTTGCTTTTGTGAAAGTGAATGCAATGCAATCAGCAACTAAAACTAAAGCTACAGCTTGAATAAGTGACCCTGGGCTGAGGTAGCGTGCCTCTATAGTGACAGCCTGTAGAAGCATGTCTCTGAGGGAAAAGATGATGCGCACACATGTTTGGGTCCCTGTAGACTCACAAGATGAAGTGAAGTTATGCCTCATCCTTCAGTGGGTCACTTAAAGTAATGAGCTAAGGTGAACTGAAGCACAATTTATGATCTAACTCATTATTTGAATGCTTAAGCAATCAATTAAGCAATGCTGAAAGTGTTATGAAACAATgtcaataatttattcattaaaaatatgtaaaatatagcTAGATCAAAATGTCATGTCATCATAGCATATGATTTTGAAACCTTCAAAACAGGATGTTCATCTGTTCATGCTGGCATTACTAATACTGTGTGGGTGTGGAAAAACTTTggtgtttatgttgttttgactAGTCACTACCAAGGCATCATGGTCACACTGAGTCAACTCAAGTCTAGCAGATCTCAGAAAAAAACCcaacaaacaattttgtgtttaataggcgtctgatagacatctaaacgtagacctTGTAAAACAAGGTTAATTTGCGCTGTCAGTGAAACTCTAATAGACATCgcagaataggccaaaactagactagtcgtcagaTAGACAGATTAGACCGACTTTAAAtgtgtagtcatttatttctgtctatttaatgactagtctagttttggcctattcttagatgtctattagattttcactggcagcccaaatttagccttgttttagccgagacgactgtttagatgtctattagacatcttttaaaaacaaaaaaaggttttttttttctctgaaatgaCCCCTAGACTAAATGTATAAACAGTCACTGgtcctttttgttttaaaaatctacATGTCTCTCCAGATATGATAAATAAATTTGCACAAAAAGAAAATCATTACAAAAGTGAAATTCAAGCAACATTTTAAAGCGAATTCTTCAATTACAGTACATACTGATTTATACAGTACCAAGACTGATATGATTGATGTACTGCTGTACCTTTGTAATGCTACCATAATGGTCTAATCTAGTGCTTTGGCTGCTACCTTGGaggcaaaaaaatattttttaacagaatttaacaaaaacactgatttcaagAGAcataaatgtcttaaaatatgtagCAGTTCATCACTGTGTGTTCAGTAATACCAGTTATAGTTGACCTTTACTCTGCATCAACATATTTGCAGCGGACTACTCTGCCAAGGCTGGTCCTCTGTGGTCGCCCGAGGCGAATAAGGCGAGGGAGGTGGTTCCAGGAGTAGGTCAGTCGGGCGGAGACCATATCGAGGGTGACGTCACTGAATTCTGCCCACAGGTTTGAGGGTACCATCTCCTTAACAAGCTTGGGCAGAGCAACAGAGTCTGGCAAAAGGCCATTAACACCTCCGAGGAGTAAATGGCAGAGAGCCCGAGACTGTAGGCTGTCCCTTAGACTGCGGAGAAGATCATCTAACCGGTCCACAAGGTTGCACTCGTCCCAGGCCTCAGGGGGTGTACTGAGCAGCAGACGAATCCAGGCGGTCTTCAGAGCATAAGACGAAAGCACCGTTCCCCATTCTGCTCCAGACTGCTGGTCCAGCACCTCTCCACTGAGGTTACGGATCTCCTTGAGGAGCTGAAGGCACTTCAGATGGCAGGAGTTGGAAGGCAGTCTACCTTTCAGGCATGTCAGCAGTCTCTGCTCCTGTCTAGGAAAATACACAGTCCAAAGGTCCTTTCCTTGCTGGGATGCCACCAAAAATCCTCCATCACTGAGAGGAAATGCTGGGATCAGCCGAATGCCCATTGATATGTGACAGCAGACGTAATCAGAGCGGGGGGTCATACGGAGGAGAACCTGCTGCTCTTCACTGAGAGAGAGACTGAGGGAGCAGCGCTGGTCAAAAGGGTAACGTACGGCAGCAAGGCAGCGCTGAGTGGCTGTGTAAAACCAGCGCTGGACAGAATCTGGACTCATCTTATAGACATTTTGAGAACTGTGCATGAATGTGTCAGTAAAGGCCTTGTGACGGCGTGTCCACTCTGCCTTGCGAGGTGTGTTCAGTGTGCACAGCGGTGGTCCTCCATGTTTGTCAGTGCAAGCGCTTGTCTCCAGTTTCAGCCCACGAGGAGCTCGCAGAGGTACGAGGATGTCAAAGCAATCAGGTGAGCCCACCTTGTGCTCCTCATAGGAGCTGCCAATCTGGATGAAGTCTCCCCTGAAGGCTAGAGAAGACTCTGGTGGGACGTCAGTACGGCCCACCCTGACAAGTTCACTGACCAATTTGGCAACATGGGCTTTGCTGTGGCCTAGAACATGTGGAGAGAGGCGCACATGCCTCTCATAGTGATCGTCCAGTAGCTCTCGCTTGGAGACTCCCGACTTTCCATGCACCTCTAGGACTTTGTGGAAACCCCTTCTTACAGAGCCAGGCTGACCTGAGCAGTATCTTATAAAGAAGTAACACAGAATAAATGCCAGAATGTACTTGAAAAGTGTAACAACTCCTGGTCCCTGGTCAGCACAGTCGCTTCCTTGGTCCTCCAATCCTCTAAAGATGTACTGATGCAGTAGCAGCAGAGCAGTGAGGATGCAAGTGACCAAAGGCCAGAAAAACCTGAGGTTGAGGGTGTAAACACTCATCCTCCTCCTGCTCCTTCTCCAGTCCACTTCAGCTCTATAGGAATGGTCGGGGCTAGCCCATGCCGATCCACTCGTCCAGATGCTGAAAATGAGGCCCAGCTGATGTTCTTTCCACCACTTTGAACAAAAGTTGTCGTGTAAGGAAAAGTTCACCCTGTTGGGTTCCTTTACAGATGCGGCGTGTGCCGAGGGCAAAAGCAGTCCTCTCATTCAGGATGTTTGAAAATCCCCCCTTTTGTCACTGTGTGCAACAGGAGCGCGGGCTCTCGGTGTGTGAGCTCAGAGAAAATGCCAAACTCTTGAGAGAggaatttctgtttaaaaaaggGGCGTTCAAAACCCAGAGCCGGTCCACCCTCCTCCTCCCTCTTCTCTTAAAGAAACAGATCTCAGAAAGGGAAGTGCTTACTGACAAAATGAGCTGCATAAAGATTTACACAACATAACTACTTATACTAACTGCATGAATAACAAAAAGAACACAATATgatgaacattttaaatgttagtaAATGGTAATAGTAAAAGGTACAACAACTAACCACAGTTCATCAAAAAGTCTACCCTCATGTCAACACAAATTTGTATGATTTCCTTTTTTCCTCTGTAGAACAAAGACGCACATGTTTTGCATTCAAATAATCACAACTGTGTTCAAAAAATGCCAAGAATAATTTATAAAAGATGATGTCATCAGTACAGGGGTGTGGCCACTGTAAGCTACAGAGAAGAGATTGAGAATGTTTATAgaaacactgaacacacacacacacacacacacgcacacacacacacacacacacacacacacacacacacacacacgctaaatATTTGACACAACCTTCTGTTAAGGGAGCGTCACAGAAAGATCTCTGTATCTTTGTTGATCCGTTACTGACCCCTAACCTCGGTGTGAGCCCTCCCACTGTCACCCACGACCTCGTGACACTGAACAAGAAACCACTGTCATCTCTCATTCAGCACACAGACTACTGTTTGAACATAGCCTATTAATATTATCTTGCTTCATAAACACAAGGTATTTAAAAGAATTATTCAAAGcttagttaaataaaattaatcactcTATTCATATCCCAATCATATCTATTCAAAACACATGTAGTCCTGTGTAAAGAGTACAGAAAGTCAGTTCTCTCTTCACTTTATTTCAGACAGACCAAACAGAAAGAAACAGTTTTCCTACCCAGCACATGCCTCTGCCACatcccttagattttttttttcaaaacaaacgCCATGGCCATGAAGGTAAGGACACCTACGGACACACAACATAGCAACACCTGGCTAAGTCTCAGAAACCCATATGACCCCTTAGAGGATAAACATAGAGAATGCTCACTAAACATGGCTGACTGAACTGTTTAGATAACAATATAACTGCTCTGTTGGGACGAAGCAGATGTCTGAGGAAGGAAGTAAACTTGAAACAGCAACGGACATGAGACAATTACCGCTACATTTCTGTCCAAGTACCTTCTTATCAAACTCTCTGTGTTATTTTGATCGGTGCTGCCCACTCTAAAAATACGAAGCTGTCTGAAGGGTCTCAACCAGTACTAAACAACAGATAAAGCACTAATGATTTCCAGAGAGGAGAGTTAAATGCAGCTTTGCTCCTGCTAAAAGAATGTCTTGTGGTTGGCATATGTCTTAAG
>TCONS_00052716
AGACACTCCTAATCTCCCTCTCCTTCCTGTCTCCTCGCTCTCTCTAGTCTTCAAAAATGACACGCAAGACAGTCAGTTTCTCCTGTCTTCTCCTCTCCCAGGAGAGAGCagcgccctcctcttcctcctcctcttgaTCAGGGTTTCTTTCAGAGACCAGTGACTCATCCAGGTTTGCAGAAGCACTGATGGATATCAAATCTGTACTGCGCGTCTCTGTCCCCGCCCGTTTTTATAGCAGCACCTCGCCGGCTGCAGACACTTGTTGCTCTTTGCTGAAATACACCGAGAGGGAAGGGTTTACGAGAGCTGCGACCACCTGCTGCCGCCCTGTGAACAAGCGGACTACTCTGCCAAGGCTGGTCCTCTGTGGTCGCCCGAGGCGAATAAGGCGAGGGAGGTGGTTCCAGGAGTAGGTCAGTCGGGCGGAGACCATATCGAGGGTGACGTCACTGAATTCTGCCCACAGGTTTGAGGGTACCATCTCCTTAACAAGCTTGGGCAGAGCAACAGAGTCTGGCAAAAGGCCATTAACACCTCCGAGGAGTAAATGGCAGAGAGCCCGAGACTGTAGGCTGTCCCTTAGACTGCGGAGAAGATCATCTAACCGGTCCACAAGGTTGCACTCGTCCCAGGCCTCAGGGGGTGTACTGAGCAGCAGACGAATCCAGGCGGTCTTCAGAGCATAAGACGAAAGCACCGTTCCCCATTCTGCTCCAGACTGCTGGTCCAGCACCTCTCCACTGAGGTTACGGATCTCCTTGAGGAGCTGAAGGCACTTCAGATGGCAGGAGTTGGAAGGCAGTCTACCTTTCAGGCATGTCAGCAGTCTCTGCTCCTGTCTAGGAAAATACACAGTCCAAAGGTCCTTTCCTTGCTGGGATGCCACCAAAAATCCTCCATCACTGAGAGGAAATGCTGGGATCAGCCGAATGCCCATTGATATGTGACAGCAGACGTAATCAGAGCGGGGGGTCATACGGAGGAGAACCTGCTGCTCTTCACTGAGAGAGAGACTGAGGGAGCAGCGCTGGTCAAAAGGGTAACGTACGGCAGCAAGGCAGCGCTGAGTGGCTGTGTAAAACCAGCGCTGGACAGAATCTGGACTCATCTTATAGACATTTTGAGAACTGTGCATGAATGTGTCAGTAAAGGCCTTGTGACGGCGTGTCCACTCTGCCTTGCGAGGTGTGTTCAGTGTGCACAGCGGTGGTCCTCCATGTTTGTCAGTGCAAGCGCTTGTCTCCAGTTTCAGCCCACGAGGAGCTCGCAGAGGTACGAGGATGTCAAAGCAATCAGGTGAGCCCACCTTGTGCTCCTCATAGGAGCTGCCAATCTGGATGAAGTCTCCCCTGAAGGCTAGAGAAGACTCTGGTGGGACGTCAGTACGGCCCACCCTGACAAGTTCACTGACCAATTTGGCAACATGGGCTTTGCTGTGGCCTAGAACATGTGGAGAGAGGCGCACATGCCTCTCATAGTGATCGTCCAGTAGCTCTCGCTTGGAGACTCCCGACTTTCCATGCACCTCTAGGACTTTGTGGAAACCCCTTCTTACAGAGCCAGGCTGACCTGAGCAGTATCTTATAAAGAAGTAACACAGAATAAATGCCAGAATGTACTTGAAAAGTGTAACAACTCCTGGTCCCTGGTCAGCACAGTCGCTTCCTTGGTCCTCCAATCCTCTAAAGATGTACTGATGCAGTAGCAGCAGAGCAGTGAGGATGCAAGTGACCAAAGGCCAGAAAAACCTGAGGTTGAGGGTGTAAACACTCATCCTCCTCCTGCTCCTTCTCCAGTCCACTTCAGCTCTATAGGAATGGTCGGGGCTAGCCCATGCCGATCCACTCGTCCAGATGCTGAAAATGAGGCCCAGCTGATGTTCTTTCCACCACTTTGAACAAAAGTTGTCGTGTAAGGAAAAGTTCACCCTGTTGGGTTCCTTTACAGATGCGGCGTGTGCCGAGGGCAAAAGCAGTCCTCTCATTCAGGATGTTTGAAAATCCCCCCTTTTGTCACTGTGTGCAACAGGAGCGCGGGCTCTCGGTGTGTGAGCTCAGAGAAAATGCCAAACTCTTGAGAGAggaatttctgtttaaaaaaggGGCGTTCAAAACCCAGAGCCGGTCCACCCTCCTCCTCCCTCTTCTCTTAAAGAAACAGATCTCAGAAAGGGAAGTGCTTACTGACAAAATGAGCTGCATAAAGATTTACACAACATAACTACTTATACTAACTGCATGAATAACAAAAAGAACACAATATgatgaacattttaaatgttagtaAATGGTAATAGTAAAAGGTACAACAACTAACCACAGTTCATCAAAAAGTCTACCCTCATGTCAACACAAATTTGTATGATTTCCTTTTTTCCTCTGTAGAACAAAGACGCACATGTTTTGCATTCAAATAATCACAACTGTGTTCAAAAAATGCCAAGAATAATTTATAAAAGATGATGTCATCAGTACAGGGGTGTGGCCACTGTAAGCTACAGAGAAGAGATTGAGAATGTTTATAgaaacactgaacacacacacacacacacacacgcacacacacacacacacacacacacacacacacacacacacacgctaaatATTTGACACAACCTTCTGTTAAGGGAGCGTCACAGAAAGATCTCTGTATCTTTGTTGATCCGTTACTGACCCCTAACCTCGGTGTGAGCCCTCCCACTGTCACCCACGACCTCGTGACACTGAACAAGAAACCACTGTCATCTCTCATTCAGCACACAGACTACTGTTTGAACATAGCCTATTAATATTATCTTGCTTCATAAACACAAGGTATTTAAAAGAATTATTCAAAGcttagttaaataaaattaatcactcTATTCATATCCCAATCATATCTATTCAAAACACATGTAGTCCTGTGTAAAGAGTACAGAAAGTCAGTTCTCTCTTCACTTTATTTCAGACAGACCAAACAGAAAGAAACAGTTTTCCTACCCAGCACATGCCTCTGCCACatcccttagattttttttttcaaaacaaacgCCATGGCCATGAAGGTAAGGACACCTACGGACACACAACATAGCAACACCTGGCTAAGTCTCAGAAACCCATATGACCCCTTAGAGGATAAACATAGAGAATGCTCACTAAACATGGCTGACTGAACTGTTTAGATAACAATATAACTGCTCTGTTGGGACGAAGCAGATGTCTGAGGAAGGAAGTAAACTTGAAACAGCAACGGACATGAGACAATTACCGCTACATTTCTGTCCAAGTACCTTCTTATCAAACTCTCTGTGTTATTTTGATCGGTGCTGCCCACTCTAAAAATACGAAGCTGTCTGAAGGGTCTCAACCAGTACTAAACAACAGATAAAGCACTAATGATTTCCAGAGAGGAGAGTTAAATGCAGCTTTGCTCCTGCTAAAAGAATGTCTTGTGGTTGGCATATGTCTTAAG

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052715 False 5240 lncRNA 0.44 2 31231809 31239563
TCONS_00052716 True 3462 lncRNA 0.47 2 31232133 31239563

Neighbor

gene id symbol gene type direction distance location
XLOC_025448 clec19a coding upstream 43678 31177972 ~ 31188131 (+)
XLOC_025447 NA coding upstream 60935 31169219 ~ 31170874 (+)
XLOC_025446 NA coding upstream 126156 31097933 ~ 31105653 (+)
XLOC_025445 si:dkey-66i24.9 coding upstream 134279 31093455 ~ 31097530 (+)
XLOC_025444 si:dkey-66i24.8 coding upstream 141248 31087509 ~ 31090561 (+)
XLOC_025450 c1ql3b coding downstream 156586 31396149 ~ 31430489 (+)
XLOC_025451 ccdc43 coding downstream 361030 31600593 ~ 31605331 (+)
XLOC_025452 fzd2 coding downstream 382211 31621774 ~ 31624213 (+)
XLOC_025453 mylk5 coding downstream 422563 31662126 ~ 31699298 (+)
XLOC_025454 dcaf7 coding downstream 477698 31717261 ~ 31726949 (+)
XLOC_025429 BX649540.1 misc upstream 982773 30248739 ~ 30249036 (+)
XLOC_025439 NA non-coding upstream 283355 30943288 ~ 30948454 (+)
XLOC_025437 NA non-coding upstream 323683 30907892 ~ 30908126 (+)
XLOC_025436 NA non-coding upstream 358649 30868418 ~ 30873160 (+)
XLOC_025455 BX324157.1 non-coding downstream 548958 31788521 ~ 31788637 (+)
XLOC_025458 NA non-coding downstream 678599 31918162 ~ 31919131 (+)
XLOC_025473 NA non-coding downstream 1054210 32293773 ~ 32297003 (+)
XLOC_025475 NA non-coding downstream 1106571 32346134 ~ 32347493 (+)
XLOC_025481 CR936975.1 non-coding downstream 1235098 32474661 ~ 32477285 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G254902 itpripl2 non-coding NW_019171545.1 APWO02001143.1 68875 ~ 73637 (-)