RNA id: TCONS_00052715


Basic Information

Item Value
RNA id TCONS_00052715
length 5240
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_025449
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31231809 ~ 31239563 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTTACTCTCGCCCCACTGTCTCACTTCCCTTCCAGAGCAACATGCCACTCTCTGGATCCAGATTTActcaatatatttatacatttatgaaaaaaaatatctgtaaatgtgACTCAAGTAATGAATTCAGGTCTCTACGGGCTTGGTTCCTCCATCCATTcctccaaaacaaacaaacaaaaaataaataaatgtacttgGTGATGTTGAGTCAAACACAAAACATCCCCTTGTCTTTctccctccctctttctctccctctcactCTCTCAATCTATCTATCCCTCCTCTTCCTCCCCATCCTCTTCAATCCCACCCACCCAGACACTCCTAATCTCCCTCTCCTTCCTGTCTCCTCGCTCTCTCTAGTCTTCAAAAATGACACGCAAGACAGTCAGTTTCTCCTGTCTTCTCCTCTCCCAGGAGAGAGCagcgccctcctcttcctcctcctcttgaTCAGGGTTTCTTTCAGAGACCAGTGACTCATCCAGGTTTGCAGAAGCACTGATGGATATCAAATCTGTACTGCGCGTCTCTGTCCCCGCCCGTTTTTATAGCAGCACCTCGCCGGCTGCAGACACTTGTTGCTCTTTGCTGAAATACACCGAGAGGGAAGGGTTTACGAGAGCTGCGACCACCTGCTGCCGCCCTGTGAACAAGGCAACACCAGAAATGAAGCTTAAAGCATTTCCCTATAAAGCTGGTGAAACTAATTTGCCTGACATGAAGGACCATGAACTCTTTGAGAACAGCTTAATGGATGAGAAAAGAGGCTGACAAATTAACCTTGTGGCTATCAGTACCTGCAAGATATCAATGAGGAATTCAGTTGCTTTTGTGAAAGTGAATGCAATGCAATCAGCAACTAAAACTAAAGCTACAGCTTGAATAAGTGACCCTGGGCTGAGGTAGCGTGCCTCTATAGTGACAGCCTGTAGAAGCATGTCTCTGAGGGAAAAGATGATGCGCACACATGTTTGGGTCCCTGTAGACTCACAAGATGAAGTGAAGTTATGCCTCATCCTTCAGTGGGTCACTTAAAGTAATGAGCTAAGGTGAACTGAAGCACAATTTATGATCTAACTCATTATTTGAATGCTTAAGCAATCAATTAAGCAATGCTGAAAGTGTTATGAAACAATgtcaataatttattcattaaaaatatgtaaaatatagcTAGATCAAAATGTCATGTCATCATAGCATATGATTTTGAAACCTTCAAAACAGGATGTTCATCTGTTCATGCTGGCATTACTAATACTGTGTGGGTGTGGAAAAACTTTggtgtttatgttgttttgactAGTCACTACCAAGGCATCATGGTCACACTGAGTCAACTCAAGTCTAGCAGATCTCAGAAAAAAACCcaacaaacaattttgtgtttaataggcgtctgatagacatctaaacgtagacctTGTAAAACAAGGTTAATTTGCGCTGTCAGTGAAACTCTAATAGACATCgcagaataggccaaaactagactagtcgtcagaTAGACAGATTAGACCGACTTTAAAtgtgtagtcatttatttctgtctatttaatgactagtctagttttggcctattcttagatgtctattagattttcactggcagcccaaatttagccttgttttagccgagacgactgtttagatgtctattagacatcttttaaaaacaaaaaaaggttttttttttctctgaaatgaCCCCTAGACTAAATGTATAAACAGTCACTGgtcctttttgttttaaaaatctacATGTCTCTCCAGATATGATAAATAAATTTGCACAAAAAGAAAATCATTACAAAAGTGAAATTCAAGCAACATTTTAAAGCGAATTCTTCAATTACAGTACATACTGATTTATACAGTACCAAGACTGATATGATTGATGTACTGCTGTACCTTTGTAATGCTACCATAATGGTCTAATCTAGTGCTTTGGCTGCTACCTTGGaggcaaaaaaatattttttaacagaatttaacaaaaacactgatttcaagAGAcataaatgtcttaaaatatgtagCAGTTCATCACTGTGTGTTCAGTAATACCAGTTATAGTTGACCTTTACTCTGCATCAACATATTTGCAGCGGACTACTCTGCCAAGGCTGGTCCTCTGTGGTCGCCCGAGGCGAATAAGGCGAGGGAGGTGGTTCCAGGAGTAGGTCAGTCGGGCGGAGACCATATCGAGGGTGACGTCACTGAATTCTGCCCACAGGTTTGAGGGTACCATCTCCTTAACAAGCTTGGGCAGAGCAACAGAGTCTGGCAAAAGGCCATTAACACCTCCGAGGAGTAAATGGCAGAGAGCCCGAGACTGTAGGCTGTCCCTTAGACTGCGGAGAAGATCATCTAACCGGTCCACAAGGTTGCACTCGTCCCAGGCCTCAGGGGGTGTACTGAGCAGCAGACGAATCCAGGCGGTCTTCAGAGCATAAGACGAAAGCACCGTTCCCCATTCTGCTCCAGACTGCTGGTCCAGCACCTCTCCACTGAGGTTACGGATCTCCTTGAGGAGCTGAAGGCACTTCAGATGGCAGGAGTTGGAAGGCAGTCTACCTTTCAGGCATGTCAGCAGTCTCTGCTCCTGTCTAGGAAAATACACAGTCCAAAGGTCCTTTCCTTGCTGGGATGCCACCAAAAATCCTCCATCACTGAGAGGAAATGCTGGGATCAGCCGAATGCCCATTGATATGTGACAGCAGACGTAATCAGAGCGGGGGGTCATACGGAGGAGAACCTGCTGCTCTTCACTGAGAGAGAGACTGAGGGAGCAGCGCTGGTCAAAAGGGTAACGTACGGCAGCAAGGCAGCGCTGAGTGGCTGTGTAAAACCAGCGCTGGACAGAATCTGGACTCATCTTATAGACATTTTGAGAACTGTGCATGAATGTGTCAGTAAAGGCCTTGTGACGGCGTGTCCACTCTGCCTTGCGAGGTGTGTTCAGTGTGCACAGCGGTGGTCCTCCATGTTTGTCAGTGCAAGCGCTTGTCTCCAGTTTCAGCCCACGAGGAGCTCGCAGAGGTACGAGGATGTCAAAGCAATCAGGTGAGCCCACCTTGTGCTCCTCATAGGAGCTGCCAATCTGGATGAAGTCTCCCCTGAAGGCTAGAGAAGACTCTGGTGGGACGTCAGTACGGCCCACCCTGACAAGTTCACTGACCAATTTGGCAACATGGGCTTTGCTGTGGCCTAGAACATGTGGAGAGAGGCGCACATGCCTCTCATAGTGATCGTCCAGTAGCTCTCGCTTGGAGACTCCCGACTTTCCATGCACCTCTAGGACTTTGTGGAAACCCCTTCTTACAGAGCCAGGCTGACCTGAGCAGTATCTTATAAAGAAGTAACACAGAATAAATGCCAGAATGTACTTGAAAAGTGTAACAACTCCTGGTCCCTGGTCAGCACAGTCGCTTCCTTGGTCCTCCAATCCTCTAAAGATGTACTGATGCAGTAGCAGCAGAGCAGTGAGGATGCAAGTGACCAAAGGCCAGAAAAACCTGAGGTTGAGGGTGTAAACACTCATCCTCCTCCTGCTCCTTCTCCAGTCCACTTCAGCTCTATAGGAATGGTCGGGGCTAGCCCATGCCGATCCACTCGTCCAGATGCTGAAAATGAGGCCCAGCTGATGTTCTTTCCACCACTTTGAACAAAAGTTGTCGTGTAAGGAAAAGTTCACCCTGTTGGGTTCCTTTACAGATGCGGCGTGTGCCGAGGGCAAAAGCAGTCCTCTCATTCAGGATGTTTGAAAATCCCCCCTTTTGTCACTGTGTGCAACAGGAGCGCGGGCTCTCGGTGTGTGAGCTCAGAGAAAATGCCAAACTCTTGAGAGAggaatttctgtttaaaaaaggGGCGTTCAAAACCCAGAGCCGGTCCACCCTCCTCCTCCCTCTTCTCTTAAAGAAACAGATCTCAGAAAGGGAAGTGCTTACTGACAAAATGAGCTGCATAAAGATTTACACAACATAACTACTTATACTAACTGCATGAATAACAAAAAGAACACAATATgatgaacattttaaatgttagtaAATGGTAATAGTAAAAGGTACAACAACTAACCACAGTTCATCAAAAAGTCTACCCTCATGTCAACACAAATTTGTATGATTTCCTTTTTTCCTCTGTAGAACAAAGACGCACATGTTTTGCATTCAAATAATCACAACTGTGTTCAAAAAATGCCAAGAATAATTTATAAAAGATGATGTCATCAGTACAGGGGTGTGGCCACTGTAAGCTACAGAGAAGAGATTGAGAATGTTTATAgaaacactgaacacacacacacacacacacacgcacacacacacacacacacacacacacacacacacacacacacgctaaatATTTGACACAACCTTCTGTTAAGGGAGCGTCACAGAAAGATCTCTGTATCTTTGTTGATCCGTTACTGACCCCTAACCTCGGTGTGAGCCCTCCCACTGTCACCCACGACCTCGTGACACTGAACAAGAAACCACTGTCATCTCTCATTCAGCACACAGACTACTGTTTGAACATAGCCTATTAATATTATCTTGCTTCATAAACACAAGGTATTTAAAAGAATTATTCAAAGcttagttaaataaaattaatcactcTATTCATATCCCAATCATATCTATTCAAAACACATGTAGTCCTGTGTAAAGAGTACAGAAAGTCAGTTCTCTCTTCACTTTATTTCAGACAGACCAAACAGAAAGAAACAGTTTTCCTACCCAGCACATGCCTCTGCCACatcccttagattttttttttcaaaacaaacgCCATGGCCATGAAGGTAAGGACACCTACGGACACACAACATAGCAACACCTGGCTAAGTCTCAGAAACCCATATGACCCCTTAGAGGATAAACATAGAGAATGCTCACTAAACATGGCTGACTGAACTGTTTAGATAACAATATAACTGCTCTGTTGGGACGAAGCAGATGTCTGAGGAAGGAAGTAAACTTGAAACAGCAACGGACATGAGACAATTACCGCTACATTTCTGTCCAAGTACCTTCTTATCAAACTCTCTGTGTTATTTTGATCGGTGCTGCCCACTCTAAAAATACGAAGCTGTCTGAAGGGTCTCAACCAGTACTAAACAACAGATAAAGCACTAATGATTTCCAGAGAGGAGAGTTAAATGCAGCTTTGCTCCTGCTAAAAGAATGTCTTGTGGTTGGCATATGTCTTAAG

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052714 lncRNA upstream 60935 31169219 ~ 31170874 (+) True XLOC_025447
TCONS_00050181 lncRNA upstream 126156 31097933 ~ 31105653 (+) False XLOC_025446
TCONS_00052713 lncRNA upstream 126156 31098188 ~ 31105653 (+) True XLOC_025446
TCONS_00050177 lncRNA upstream 189709 31039958 ~ 31042100 (+) True XLOC_025442
TCONS_00052712 lncRNA upstream 283355 30943288 ~ 30948454 (+) True XLOC_025439
TCONS_00050190 lncRNA downstream 422682 31662245 ~ 31668846 (+) False XLOC_025453
TCONS_00050192 lncRNA downstream 477698 31717261 ~ 31720005 (+) False XLOC_025454
TCONS_00052717 lncRNA downstream 678599 31918162 ~ 31919131 (+) True XLOC_025458
TCONS_00052718 lncRNA downstream 860136 32099699 ~ 32100639 (+) False XLOC_025464
TCONS_00050208 lncRNA downstream 860136 32099699 ~ 32100639 (+) False XLOC_025464
TCONS_00050182 mRNA upstream 43678 31177972 ~ 31188131 (+) True XLOC_025448
TCONS_00050180 mRNA upstream 134279 31093455 ~ 31097530 (+) True XLOC_025445
TCONS_00050179 mRNA upstream 141248 31087509 ~ 31090561 (+) True XLOC_025444
TCONS_00050178 mRNA upstream 171200 31058464 ~ 31060609 (+) True XLOC_025443
TCONS_00050176 mRNA upstream 189707 31039923 ~ 31042102 (+) False XLOC_025442
TCONS_00050183 mRNA downstream 156586 31396149 ~ 31430489 (+) False XLOC_025450
TCONS_00050184 mRNA downstream 156691 31396254 ~ 31430489 (+) True XLOC_025450
TCONS_00050185 mRNA downstream 361030 31600593 ~ 31605331 (+) False XLOC_025451
TCONS_00050186 mRNA downstream 361054 31600617 ~ 31603222 (+) False XLOC_025451
TCONS_00050188 mRNA downstream 382211 31621774 ~ 31624213 (+) True XLOC_025452
TCONS_00050170 other upstream 536937 30694783 ~ 30694872 (+) True XLOC_025435
TCONS_00050160 other upstream 982773 30248739 ~ 30249036 (+) True XLOC_025429
TCONS_00050148 other upstream 1576884 29654160 ~ 29654925 (+) True XLOC_025418
TCONS_00050146 other upstream 1576888 29642200 ~ 29654921 (+) False XLOC_025418
TCONS_00050187 other downstream 361085 31600648 ~ 31603704 (+) True XLOC_025451
TCONS_00050194 other downstream 548958 31788521 ~ 31788637 (+) True XLOC_025455
TCONS_00050246 other downstream 1293033 32532596 ~ 32535126 (+) False XLOC_025485
TCONS_00050254 other downstream 1331746 32571309 ~ 32571371 (+) True XLOC_025487
TCONS_00050265 other downstream 1422428 32661991 ~ 32663746 (+) False XLOC_025493

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000069_03014089_03015762.mRNA True 3811 mRNA 0.44 1 CI01000069 3012696 ~ 3016506 (-)