Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00050177 |
| length | 677 |
| lncRNA type | retained_intron |
| GC content | 0.44 |
| exon number | 3 |
| gene id | XLOC_025442 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 31039923 ~ 31042102 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0009060 | aerobic respiration | biological_process |
| GO:0006123 | mitochondrial electron transport, cytochrome c to oxygen | biological_process |
| GO:0005743 | mitochondrial inner membrane | cellular_component |
| GO:0005751 | mitochondrial respiratory chain complex IV | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0005739 | mitochondrion | cellular_component |
| GO:0030234 | enzyme regulator activity | molecular_function |
| GO:0004129 | cytochrome-c oxidase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040912-129 | Predicted to enable enzyme regulator activity. Predicted to be involved in mitochondrial electron transport, cytochrome c to oxygen. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex IV. Is expressed in brain; gill; heart; liver; and skeletal muscle. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease recessive intermediate D and cytochrome-c oxidase deficiency disease. Orthologous to several human genes including COX6A2 (cytochrome c oxidase subunit 6A2). |
| ensembl_id | ENSDART00000140547 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00052712 | lncRNA | upstream | 91504 | 30943288 ~ 30948454 (+) | True | XLOC_025439 |
| TCONS_00052348 | lncRNA | upstream | 131832 | 30907892 ~ 30908126 (+) | True | XLOC_025437 |
| TCONS_00052711 | lncRNA | upstream | 166798 | 30868418 ~ 30873160 (+) | True | XLOC_025436 |
| TCONS_00052708 | lncRNA | upstream | 344151 | 30694393 ~ 30695807 (+) | False | XLOC_025435 |
| TCONS_00050181 | lncRNA | downstream | 55833 | 31097933 ~ 31105653 (+) | False | XLOC_025446 |
| TCONS_00052713 | lncRNA | downstream | 56088 | 31098188 ~ 31105653 (+) | True | XLOC_025446 |
| TCONS_00052714 | lncRNA | downstream | 127119 | 31169219 ~ 31170874 (+) | True | XLOC_025447 |
| TCONS_00052715 | lncRNA | downstream | 189709 | 31231809 ~ 31239563 (+) | False | XLOC_025449 |
| TCONS_00052716 | lncRNA | downstream | 190033 | 31232133 ~ 31239563 (+) | True | XLOC_025449 |
| TCONS_00050175 | mRNA | upstream | 51625 | 30980852 ~ 30988333 (+) | True | XLOC_025441 |
| TCONS_00050173 | mRNA | upstream | 64456 | 30968176 ~ 30975502 (+) | False | XLOC_025440 |
| TCONS_00050174 | mRNA | upstream | 65915 | 30968883 ~ 30974043 (+) | True | XLOC_025440 |
| TCONS_00050172 | mRNA | upstream | 112956 | 30922947 ~ 30927002 (+) | True | XLOC_025438 |
| TCONS_00050171 | mRNA | upstream | 113637 | 30921246 ~ 30926321 (+) | False | XLOC_025438 |
| TCONS_00050178 | mRNA | downstream | 16364 | 31058464 ~ 31060609 (+) | True | XLOC_025443 |
| TCONS_00050179 | mRNA | downstream | 45409 | 31087509 ~ 31090561 (+) | True | XLOC_025444 |
| TCONS_00050180 | mRNA | downstream | 51355 | 31093455 ~ 31097530 (+) | True | XLOC_025445 |
| TCONS_00050182 | mRNA | downstream | 135872 | 31177972 ~ 31188131 (+) | True | XLOC_025448 |
| TCONS_00050183 | mRNA | downstream | 354049 | 31396149 ~ 31430489 (+) | False | XLOC_025450 |
| TCONS_00050170 | other | upstream | 345086 | 30694783 ~ 30694872 (+) | True | XLOC_025435 |
| TCONS_00050160 | other | upstream | 790922 | 30248739 ~ 30249036 (+) | True | XLOC_025429 |
| TCONS_00050148 | other | upstream | 1385033 | 29654160 ~ 29654925 (+) | True | XLOC_025418 |
| TCONS_00050146 | other | upstream | 1385037 | 29642200 ~ 29654921 (+) | False | XLOC_025418 |
| TCONS_00050187 | other | downstream | 558548 | 31600648 ~ 31603704 (+) | True | XLOC_025451 |
| TCONS_00050194 | other | downstream | 746421 | 31788521 ~ 31788637 (+) | True | XLOC_025455 |
| TCONS_00050246 | other | downstream | 1490496 | 32532596 ~ 32535126 (+) | False | XLOC_025485 |
| TCONS_00050254 | other | downstream | 1529209 | 32571309 ~ 32571371 (+) | True | XLOC_025487 |
| TCONS_00050265 | other | downstream | 1619891 | 32661991 ~ 32663746 (+) | False | XLOC_025493 |
