RNA id: TCONS_00050179


Basic Information

Item Value
RNA id TCONS_00050179
length 1595
RNA type mRNA
GC content 0.46
exon number 2
gene id XLOC_025444
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31087509 ~ 31090561 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAACGTTACCCAGTACATGACAGCTTAAATCCCTGCATACAAACTCATAACCACACGCCACCGTTCAACAGTCATTTAGATAAATAGCAGAAAGATCGAATTAAGAGTAAGCTGAATATAACGCTGGTAAAATCATGGTCATCCTAGTCGCACCGAACTGTCCAAACAAACATTAATGACTGGAGGAGATATGCAGCTTTAAAGATGatgtttattaaagacgagagtGAGGATGCGCCTGATCCAGACAACAGCATAATAAAAATTGAGGAGCACGAAGACCTGTCAGAAGTGAAAGAGGAAAGTCAACTTCTAGATGACGTGCAGGAGGAATATCAGCCTCAGAAAGCTCATGAAATCATCACTAATGAATCCCTCAGTGTCTCCCAAACTATAACGAGTGTTCCTCAAAGCTTCCCTATAACAACAAACGTCAAAAAGCCTTTCGCTTGCTCTTTATGTGGAAAACGGTGCAACCACAGAGGCCATCTTAACGATCACATGCTGACTCACACCGGAGAAAAACCGTTCGcctgccctcagtgtggaaagagattCTCGCGCAGGCGAAACCTCAACGATCACAAGCTAACCCACAACGATGAGAAGCCTTTCGTCTGTCCTCAATGCGGCAAGTGTTATAAACGCAACGAACACTTTCAGAGTCACCTACTAAGTCACAATGCAGGCAAACCCTACACTTGCTCTCAATGCGGAAAGAGTTTCAGCTATAGAAGGACCCTGAATGATCACATTAAAATCCACACGGGCGAGTGTCTTCACGTTTGTTTACAGTGCGGAAAGAGTTTCCTGAATAAGGGACACCTAAAGGAACACGTAAAAATCCACACAGGAGAAAGACCTTTCTcctgccctcagtgtggaaagagtttcatgAGCAAACGGGACGTCGCctatcacatgaggatccacacagaGGAGAAGCCTTTCAAATGTCACCTGTGTGAAAAGGGTTTCGCCTGGGCAagctgcctgaaaattcacatgagCCACTCTCACTCTGGCGTGAGGCAGTTTACCTGCGAGCACTGTAACAAAAAGTTTGTTCTGGAGTCCTACTTGAAGAGGCACCTGAAAATCCATCAAAACGAGAAACCCTACGTCTGCTCCGTTTGCGGGAAAGGGTTTTTATGGCAGCTGTCTTTCAAGGCGCACCAAAAAATACATGAGGGGATGAAGACGCATGTGTGCTCGGAGTGCGAAAGAGCTTTTACCAGAGCCGACTATTTGATAAAGCACAGAAAAGTGCATACAGGAGAGCGACCGTTCACATGCTCCtattgtggaaagagtttcagcaaGAAAGCGAACTTGGGAGAGCACGAGAGActgcacactggagagaaacccttcaTCTGCGGTCACTGTGGAAGCGGTTTCACCTCAGCGAAACGCTTGAGCTATCACAGAGAAAAGCAGTGCGCTGGGATCGCAGTGGATTCATGCTCTGTGGAAGTGGTGATTGTTCCAGATTTGATTGAGAATTGCATTCCTGTAGATTCTGCCACACACAACCTTTAGGGGTGAATAGACTGATATTCCGTGTCTGTGGCAGCCTTGACTGAACAggtac

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130531-72 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000129564

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050177 lncRNA upstream 45409 31039958 ~ 31042100 (+) True XLOC_025442
TCONS_00052712 lncRNA upstream 139055 30943288 ~ 30948454 (+) True XLOC_025439
TCONS_00052348 lncRNA upstream 179383 30907892 ~ 30908126 (+) True XLOC_025437
TCONS_00052711 lncRNA upstream 214349 30868418 ~ 30873160 (+) True XLOC_025436
TCONS_00052710 lncRNA upstream 391702 30694423 ~ 30695807 (+) False XLOC_025435
TCONS_00050181 lncRNA downstream 7372 31097933 ~ 31105653 (+) False XLOC_025446
TCONS_00052713 lncRNA downstream 7627 31098188 ~ 31105653 (+) True XLOC_025446
TCONS_00052714 lncRNA downstream 78658 31169219 ~ 31170874 (+) True XLOC_025447
TCONS_00052715 lncRNA downstream 141248 31231809 ~ 31239563 (+) False XLOC_025449
TCONS_00052716 lncRNA downstream 141572 31232133 ~ 31239563 (+) True XLOC_025449
TCONS_00050178 mRNA upstream 26900 31058464 ~ 31060609 (+) True XLOC_025443
TCONS_00050176 mRNA upstream 45407 31039923 ~ 31042102 (+) False XLOC_025442
TCONS_00050175 mRNA upstream 99176 30980852 ~ 30988333 (+) True XLOC_025441
TCONS_00050173 mRNA upstream 112007 30968176 ~ 30975502 (+) False XLOC_025440
TCONS_00050174 mRNA upstream 113466 30968883 ~ 30974043 (+) True XLOC_025440
TCONS_00050180 mRNA downstream 2894 31093455 ~ 31097530 (+) True XLOC_025445
TCONS_00050182 mRNA downstream 87411 31177972 ~ 31188131 (+) True XLOC_025448
TCONS_00050183 mRNA downstream 305588 31396149 ~ 31430489 (+) False XLOC_025450
TCONS_00050184 mRNA downstream 305693 31396254 ~ 31430489 (+) True XLOC_025450
TCONS_00050185 mRNA downstream 510032 31600593 ~ 31605331 (+) False XLOC_025451
TCONS_00050170 other upstream 392637 30694783 ~ 30694872 (+) True XLOC_025435
TCONS_00050160 other upstream 838473 30248739 ~ 30249036 (+) True XLOC_025429
TCONS_00050148 other upstream 1432584 29654160 ~ 29654925 (+) True XLOC_025418
TCONS_00050146 other upstream 1432588 29642200 ~ 29654921 (+) False XLOC_025418
TCONS_00050187 other downstream 510087 31600648 ~ 31603704 (+) True XLOC_025451
TCONS_00050194 other downstream 697960 31788521 ~ 31788637 (+) True XLOC_025455
TCONS_00050246 other downstream 1442035 32532596 ~ 32535126 (+) False XLOC_025485
TCONS_00050254 other downstream 1480748 32571309 ~ 32571371 (+) True XLOC_025487
TCONS_00050265 other downstream 1571430 32661991 ~ 32663746 (+) False XLOC_025493

Expression Profile

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