XLOC_025450 (c1ql3b)


Basic Information

Item Value
gene id XLOC_025450
gene name c1ql3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31396149 ~ 31430489 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050183
CCAGCAGTCACCATTTCGGCTCCCGGCAGACCCACGCTGGCTGCCCAGCCACTCCCGCGCCTCAGCCTGGGCAGGAAGACCCTGGTGGCGGCTGCTGTAGGGGTCATGCTGGTGCTGGTGCTGGTGGTGCTTATCCCCGTGCTGGTCAGCTCCGTGAGCAATGACAACAGCCACTATGAGATGCTGGGCACCTGTCGAATGGTGTGCGATCCATACCAGAACAAGGGCACCACCACGGGCATCGCCAGCACCGGCTCTTCTGTACAGGCCGAGGCCGAGGCTCTGGCCGACCACAGCAACATGCCTCCACCCTCTACGCTCCTCCAGGGGCCACCGGGGAAGCCGGGCCGACCAGGCAAACCCGGACCTCCGGGGCCTCCAGGGGAGCCAGGGCCCCCGGGTCCAATGGGGCCCCCGGGGGACCGGGGGGACAGGGGCCGAAACGGGGTTCTGAGTCTGGGCAATGATGGAGCTATCAGCACAGTTACATACAACACGCACCCACGAGTGGCTTTCTACGCTGGACTCAAAAACCCACACGAGGGCTACGAGATCCTCAAGTTCGACGATGTGGTCACCAACCTCGGCAACAACTATGATGGCACTTCGGGAAAGTTCATCTGCAGCGTGCCCGGCACATACTTCTTTATCTACCACGTTCTGATGAGGGGAGGCGATGGAACCAGCATGTGGGCTGACCTGTGCAAGAACGGACAGGTGCGAGCCAGTGCGATTGCTCAAGATGCTGATCAGAACTATGACTACGCCTCGAACAGTGTGATTCTGCATCTAGACGCTGGCGATGAAGTCTACATCAAACTGGATGGTGGCAAAGCCCACGGgggcaacaacaacaaatacagtACCTTCTCTGGCTTCATTCTGTACGCTGACTGA
>TCONS_00050184
ATGCTGGTGCTGGTGCTGGTGGTGCTTATCCCCGTGCTGGTCAGCTCCGTGAGCAATGACAACAGCCACTATGAGATGCTGGGCACCTGTCGAATGGTGTGCGATCCATACCAGAACAAGGGCACCACCACGGGCATCGCTCTGGCCGACCACAGCAACATGCCTCCACCCTCTACGCTCCTCCAGGGGCCACCGGGGAAGCCGGGCCGACCAGGCAAACCCGGACCTCCGGGGCCTCCAGGGGAGCCAGGGCCCCCGGGTCCAATGGGGCCCCCGGGGGACCGGGGGGACAGGGGCCGAAACGGGGTTCTGAGTCTGGGCAATGATGGAGCTATCAGCACAGTTACATACAACACGCACCCACGAGTGGCTTTCTACGCTGGACTCAAAAACCCACACGAGGGCTACGAGATCCTCAAGTTCGACGATGTGGTCACCAACCTCGGCAACAACTATGATGGCACTTCGGGAAAGTTCATCTGCAGCGTGCCCGGCACATACTTCTTTATCTACCACGTTCTGATGAGGGGAGGCGATGGAACCAGCATGTGGGCTGACCTGTGCAAGAACGGACAGGTGCGAGCCAGTGCGATTGCTCAAGATGCTGATCAGAACTATGACTACGCCTCGAACAGTGTGATTCTGCATCTAGACGCTGGCGATGAAGTCTACATCAAACTGGATGGTGGCAAAGCCCACGGgggcaacaacaacaaatacagtACCTTCTCTGGCTTCATTCTGTACGCTGACTGA

Function

symbol description
c1ql3b Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Orthologous to human C1QL3 (complement C1q like 3).

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1836 Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Orthologous to human C1QL3 (complement C1q like 3).

Ensembl:

ensembl_id ENSDARG00000028521

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050183 False 897 mRNA 0.60 2 31396149 31430489
TCONS_00050184 True 756 mRNA 0.58 3 31396254 31430489

Neighbor

gene id symbol gene type direction distance location
XLOC_025449 NA coding upstream 156586 31231809 ~ 31239563 (+)
XLOC_025448 clec19a coding upstream 208018 31177972 ~ 31188131 (+)
XLOC_025447 NA coding upstream 225275 31169219 ~ 31170874 (+)
XLOC_025446 NA coding upstream 290496 31097933 ~ 31105653 (+)
XLOC_025445 si:dkey-66i24.9 coding upstream 298619 31093455 ~ 31097530 (+)
XLOC_025451 ccdc43 coding downstream 170104 31600593 ~ 31605331 (+)
XLOC_025452 fzd2 coding downstream 191285 31621774 ~ 31624213 (+)
XLOC_025453 mylk5 coding downstream 231637 31662126 ~ 31699298 (+)
XLOC_025454 dcaf7 coding downstream 286772 31717261 ~ 31726949 (+)
XLOC_025455 BX324157.1 coding downstream 358032 31788521 ~ 31788637 (+)
XLOC_025429 BX649540.1 misc upstream 1147113 30248739 ~ 30249036 (+)
XLOC_025439 NA non-coding upstream 447695 30943288 ~ 30948454 (+)
XLOC_025437 NA non-coding upstream 488023 30907892 ~ 30908126 (+)
XLOC_025458 NA non-coding downstream 487673 31918162 ~ 31919131 (+)
XLOC_025473 NA non-coding downstream 863284 32293773 ~ 32297003 (+)
XLOC_025475 NA non-coding downstream 915645 32346134 ~ 32347493 (+)
XLOC_025481 CR936975.1 non-coding downstream 1044172 32474661 ~ 32477285 (+)

Expression


Co-expression Network