RNA id: TCONS_00052714


Basic Information

Item Value
RNA id TCONS_00052714
length 1656
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id XLOC_025447
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31169219 ~ 31170874 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cagatgcagaaacttttgacatatgaattcatcttgactaagggtaaggtttttgttcagaattaatcattatttaaaatcattgtattttctttgttattatgtacagattttaaaagaatgtactttcttttaataaagaactCTTCACAGCACTGCACCTGAACAGTCACAACCTCACAGAGCTGCACAACTGCCCCACTCAGATCAGTGTTGAAGCTGGAACCTCATCTTGTGTACAGCAAAGGCAGAGCTGAAAATTGACTGTTTGTCTTGTATTGTGTGGTAAGtcatagttttattattttttttattttattgcaacactaagtagtccattctgtggccaatatgatataaagggcctaaaatgggactgacgtgatcattgttttgatttctagataagtactcatggggctacacatgcagctgaagttagcttcattgagtaggacatttctttcagtatactcttaaagagattcacccaaaaatgaaaattctgtcattattgactcatccttcacttgttccaaatatgtCTGACTTGCttacttcagttaaacacaaaaaaattatattttaaagaaagatgaaaacctgcaaacattaacttccatagtatttgtttttcctactatgtatgtcaatgttttcagctttccagctttcttcaaaaaacttccttcatgttcaacacaaagtaacttggaagtttttaaaaaatgtttacaaccatttaaaggagagtaaatagtgaactgttcctttaacccaatctagttgactttactagaaaattgtatagaaacccagtggcttaaaccccttacattttatacaaggtacaacttaacagccatacttgaattaaaatattactgtaagttcaagaagattgtaaaggttctaggttaatttaaagtgggctgtttagtttcaccttgtgtaaaaacataaaggatttaaggcaacatgtttcgatgcagttttctaataaagtcaactagtttgggttaagagtgtaatgggttacagtaatagcagtgaatcatgcaggcataaaataaatgtttagccatgtaaagcaataagcttgttataatttagaaatattttagggtgaagcacagtatgctgttgtagttttcatataattgatgagtcaaacatgagatgtgttttaaattgcaagacgtgaattaacaatatgttcatcaagattcaaatcttgcatcttatattttttaaggttttggcccaataatacccatattctgctatttaaaaaatcatgctggaatttgtgtcagcattcccttcaatgaaaactacaacagtggacatcagtggtgataaaaatgtatgtgaaggataagggtgttcataatgagaagtgcagttactatcctgatctctgagtttgtagaactgacagatctgcttggaataaatggaaacatgctggaaatgtttaacctattatacagttaattcaagagtgccaggtttaatgacactttacatatataaataaacatcactgaactttctaaatgaaacctaacactcattctttgttcagtaatgatgttgtgcacttctaatactttacagtggcaaaacctggaataacacatgggagccctccag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050181 lncRNA upstream 63566 31097933 ~ 31105653 (+) False XLOC_025446
TCONS_00052713 lncRNA upstream 63566 31098188 ~ 31105653 (+) True XLOC_025446
TCONS_00050177 lncRNA upstream 127119 31039958 ~ 31042100 (+) True XLOC_025442
TCONS_00052712 lncRNA upstream 220765 30943288 ~ 30948454 (+) True XLOC_025439
TCONS_00052348 lncRNA upstream 261093 30907892 ~ 30908126 (+) True XLOC_025437
TCONS_00052715 lncRNA downstream 60935 31231809 ~ 31239563 (+) False XLOC_025449
TCONS_00052716 lncRNA downstream 61259 31232133 ~ 31239563 (+) True XLOC_025449
TCONS_00050190 lncRNA downstream 491371 31662245 ~ 31668846 (+) False XLOC_025453
TCONS_00050192 lncRNA downstream 546387 31717261 ~ 31720005 (+) False XLOC_025454
TCONS_00052717 lncRNA downstream 747288 31918162 ~ 31919131 (+) True XLOC_025458
TCONS_00050180 mRNA upstream 71689 31093455 ~ 31097530 (+) True XLOC_025445
TCONS_00050179 mRNA upstream 78658 31087509 ~ 31090561 (+) True XLOC_025444
TCONS_00050178 mRNA upstream 108610 31058464 ~ 31060609 (+) True XLOC_025443
TCONS_00050176 mRNA upstream 127117 31039923 ~ 31042102 (+) False XLOC_025442
TCONS_00050175 mRNA upstream 180886 30980852 ~ 30988333 (+) True XLOC_025441
TCONS_00050182 mRNA downstream 7098 31177972 ~ 31188131 (+) True XLOC_025448
TCONS_00050183 mRNA downstream 225275 31396149 ~ 31430489 (+) False XLOC_025450
TCONS_00050184 mRNA downstream 225380 31396254 ~ 31430489 (+) True XLOC_025450
TCONS_00050185 mRNA downstream 429719 31600593 ~ 31605331 (+) False XLOC_025451
TCONS_00050186 mRNA downstream 429743 31600617 ~ 31603222 (+) False XLOC_025451
TCONS_00050170 other upstream 474347 30694783 ~ 30694872 (+) True XLOC_025435
TCONS_00050160 other upstream 920183 30248739 ~ 30249036 (+) True XLOC_025429
TCONS_00050148 other upstream 1514294 29654160 ~ 29654925 (+) True XLOC_025418
TCONS_00050146 other upstream 1514298 29642200 ~ 29654921 (+) False XLOC_025418
TCONS_00050187 other downstream 429774 31600648 ~ 31603704 (+) True XLOC_025451
TCONS_00050194 other downstream 617647 31788521 ~ 31788637 (+) True XLOC_025455
TCONS_00050246 other downstream 1361722 32532596 ~ 32535126 (+) False XLOC_025485
TCONS_00050254 other downstream 1400435 32571309 ~ 32571371 (+) True XLOC_025487
TCONS_00050265 other downstream 1491117 32661991 ~ 32663746 (+) False XLOC_025493

Expression Profile

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