XLOC_025418 (eif3d)


Basic Information

Item Value
gene id XLOC_025418
gene name eif3d
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 29640837 ~ 29654925 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050142
taacagaagaaagaatctcttGAAAGTTCAATACAAggaaaggTCGTAAAGGGTCGAAAACGGGAGTGACGCGTTCCTTTACGGCACGACCTCTTGCCGCAACGTCTGGGAGTAGTCGAGCATCCGCGAATCAATACGGATTCGTACACCAGTAAAGGCGATGGCAAAGTTCCATGCACCTGTGATTCAGGACAACCCATCAGGATGGGGTCCATGTGCTGTTCCTGAGAAGTTTAAAGACATGCCCTACCAGCCTTTCAGTAAAGGAGACAGACTGGGAAAGGTGGCTGACTGGACTGGTGCAACATACCAGGATAAGAGATACACAAATAAATATTCATCTCAGTTTGGAGGCGGCAGTCAGTATGCTTACTTCCATGAGGAGGATGAGGCGAGCTTCCAGCTGGTGGACACTGCCAAGACTCAGAAGACTGCCTATCAGAGAAACCGGATGCGATTTGCTCAGAGGAACCTCCGGAGAGACAAAGACCGCAGGACTCTTACTCAGTTCAATATGCAGACCCTGCCTAAGAGCGCCAAGCAGAAGGAAAGGGACCGTATGCGCCTGCAGAAGAAATTCCAGAAGCAATTTGGTGTGCGACAAAAGTGGGATCAAAAGTCACAGCTCAAGCCCAGAGACTCCTCTGTTGAGGTGCGCAGTGACTGGGAGGTGAAGGAGGAGATGGACTTCCCCAGGCTCATGAAGATGAGATACATGGATGTGGCCGACCCATTGGACATTGAGTGCTGTGGAGCTCTTGAGCACTACGACAAGGCTTTTGATCGCATCACCACGCGAAATGAAAAACCACTCAAAAGCATCAAGAGGATCTTCCACACCGTTACCACCACCGATGACCCAGTGATCCGCAAGCTGGCCAAGACCCAAGGCAATGTGTTTGCCACTGATGCCATCCTGGCTACTCTGATGTGCTGCACACGCTCTGTCAACTCCTGGGATATTATCGTTCAGCGTGTGGGCAACAAGCTCTTTTTCGACAAGAGAGACAACTCTGATTTTGatctGCTCACCGTGAGCGAGACTGCGAATGAGCCGCCTCAGGATGAGGGCAGTTCCCTCAACTCCCCCCGAAACCTGGCCATGGAGGCTACTTACATCAACCACAACTTCAGTCAGCAGTGTCTCCGCATGGGGGGAGAGAGATACAAGTTCCCCAACCCTAACCCATTTGTTGAGGAAGACACGGAGAAGAGTGAAGTGGCATCTGTTGCATACAGGTACCGGAGGTGGAAGCTGGGTGAAGACATTGACCTCATTGTGCGCTGTGAACATGATGGAGTGATGACTGGAGCAAATGGAGAAGTCTCTTTCATCAATGTCAAGACCCTGAACGAGTGGGACTCCAGATACTGCAATGGAGTGGACTGGAGACAGAAACTGGACTCTCAGAGAGGAGCCGTTCTGGCCACCGAGCTCAAGAACAACAGCTACAAATTGGCCCGCTGGACCTGCTGTGCCATTCTTGCAGGATCCGAGTACCTCAAATTAGGGTATGTGTCCCGTTATCATGTCAAGGACTCCTCTAGGCATGTGGTTCTGGGCACACAGCAGTTCAAGCCCAATGAGTTTGCCAGCCAGATTAATCTGAGCATGGAGAACGCCTGGGGGATCCTTCGCTGCGTGATCGACATCTGCCGCAAGCTGGAGGAGGGCAAATACCTCATCCTTAAAGACCCCAATAAGCAAGTCATCAGGGTGTACAGCCTGCCTGATGGAACCTTCAGCTCAGATGAAGACGAGGAGGAAGATGATGAGGACGAGGAGGATGAAGAAGAGGACGAAGACAATTAAGCTGTCATTATCTACCACAGCTGTCTGCATTCTGTGTTTCAAAGCTGTCAGAGCTGAATAAAGATTTgagtattattca
>TCONS_00050143
CACGACCTCTTGCCGCAACGTCTGGGAGTAGTCGAGCATCCGCGAATCAATACGGATTCGTACACCAGTAAAGGCGATGGCAAAGTTCCATGCACCTGTGATTCAGGACAACCCATCAGGATGGGGTCCATGTGCTGTTCCTGAGAAGTTTAAAGACATGCCCTACCAGCCTTTCAGTAAAGGAGACAGACTGGGAAAGGTGGCTGACTGGACTGGTGCAACATACCAGGATAAGAGATACACAATTCCCCAACCCTAACCCATTTGTTGAGGAAGACACGGAGAAGAGTGAAGTGGCATCTGTTGCATACAGGTACCGGAGGTGGAAGCTGGGTGAAGACATTGACCTCATTGTGCGCTGTGAACATGATGGAGTGATGACTGGAGCAAATGGAGAAGTCTCTTTCATCAATGTCAAGACCCTGAACGAGTGGGACTCCAGATACTGCAATGGAGTGGACTGGAGACAGAAACTGGACTCTCAGAGAGGAGCCGTTCTGGCCACCGAGCTCAAGAACAACAGCTACAAATTGGCCCGCTGGACCTGCTGTGCCATTCTTGCAGGATCCGAGTACCTCAAATTAGGGTATGTGTCCCGTTATCATGTCAAGGACTCCTCTAGGCATGTGGTTCTGGGCACACAGCAGTTCAAGCCCAATGAGTTTGCCAGCCAGATTAATCTGAGCATGGAGAACGCCTGGGGGATCCTTCGCTGCGTGATCGACATCTGCCGCAAGCTGGAGGAGGGCAAATACCTCATCCTTAAAGACCCCAATAAGCAAGTCATCAGGGTGTACAGCCTGCCTGATGGAACCTTCAGCTC
>TCONS_00050144
CGACCTCTTGCCGCAACGTCTGGGAGTAGTCGAGCATCCGCGAATCAATACGGATTCGTACACCAGTAAAGGCGATGGCAAAGTTCCATGCACCTGTGATTCAGGACAACCCATCAGGATGGGGTCCATGTGCTGTTCCTGAGAAGTTTAAAGACATGCCCTACCAGCCTTTCAGTAAAGGAGACAGACTGGGAAAGGTGGCTGACTGGACTGGTGCAACATACCAGGATAAGAGATACACAAATAAATATTCATCTCAGTTTGGAGGCGGCAGTCAGTATGCTTACTTCCATGAGGAGGATGAGGCGAGCTTCCAGCTGGTGGACACTGCCAAGACTCAGAAGACTGCCTATCAGAGAAACCGGATGCGATTTGCTCAGAGGAACCTCCGGAGAGACAAAGACCGCAGGACTCTTACTCAGTTCAATATGCAGACCCTGCCTAAGAGCGCCAAGCAGAAGGAAAGGGACCGTATGCGCCTGCAGAAGAAATTCCAGAAGCAATTTGGTGTGCGACAAAAGTGGGATCAAAAGTCACAGGCTCAGCTCAAGCCCAGAGACTCCTCTGTTGAGGTGCGCAGTGACTGGGAGGTGAAGGAGGAGATGGACTTCCCCAGGCTCATGAAGATGAGATACATGGATGTGGCCGACCCATTGGACATTGAGTGCTGTGGAGCTCTTGAGCACTACGACAAGGCTTTTGATCGCATCACCACGCGAAATGAAAAACCACTCAAAAGCATCAAGAGGATCTTCCACACCGTTACCACCACCGATGACCCAGTGATCCGCAAGCTGGCCAAGACCCAAGGCAATGTGTTTGCCACTGATGCCATCCTGGCTACTCTGATGTGCTGCACACGCTCTGTCAACTCCTGGGATATTATCGTTCAGCGTGTGGGCAACAAGCTCTTTTTCGACAAGAGAGACAACTCTGATTTTGatctGCTCACCGTGAGCGAGACTGCGAATGAGCCGCCTCAGGATGAGGGCAGTTCCCTCAACTCCCCCCGAAACCTGGCCATGGAGGCTACTTACATCAACCACAACTTCAGTCAGCAGTGTCTCCGCATGGGGGGAGAGAGATACAAGTTCCCCAACCCTAACCCATTTGTTGAGGAAGACACGGAGAAGAGTGAAGTGGCATCTGTTGCATACAGGTACCGGAGGTGGAAGCTGGGTGAAGACATTGACCTCATTGTGCGCTGTGAACATGATGGAGTGATGACTGGAGCAAATGGAGAAGTCTCTTTCATCAATGTCAAGACCCTGAACGAGTGGGACTCCAGATACTGCAATGGAGTGGACTGGAGACAGAAACTGGACTCTCAGAGAGGAGCCGTTCTGGCCACCGAGCTCAAGAACAACAGCTACAAATTGGCCCGCTGGACCTGCTGTGCCATTCTTGCAGGATCCGAGTACCTCAAATTAGGGTATGTGTCCCGTTATCATGTCAAGGACTCCTCTAGGCATGTGGTTCTGGGCACACAGCAGTTCAAGCCCAATGAGTTTGCCAGCCAGATTAATCTGAGCATGGAGAACGCCTGGGGGATCCTTCGCTGCGTGATCGACATCTGCCGCAAGCTGGAGGAGGGCAAATACCTCATCCTTAAAGACCCCAATAAGCAAGTCATCAGGGTGTACAGCCTGCCTGATGGAACCTTCAGCTCAGATGAAGACGAGGAGGAAGATGATGAGGACGAGGAGGATGAAGAAGAGGACGAAGACAATTAAGCTGTCATTATCTACCACAGCTGTCTGCATTCTGTGTTTCAAAGCTGTCAGAGCTGAATAAAGATTTgagtattattc
>TCONS_00050145
GAGCATGTGCGCTTCTGCTTAGTCCGTCAGCTGCTTTTACGCGCTCAATCCCTCCGTGCCGCATTTCAACTCTCAGAACTCATTGTTCAACAGTGACAGCAACTATCATGTTTAGTAACCTATATATGTTTCCAAATTAAGCTCGAAGTCAAATTAACAGGGACGGATTGTGTACATGGATGTTTATGAGCGATGGCAAAGTTCCATGCACCTGTGATTCAGGACAACCCATCAGGATGGGGTCCATGTGCTGTTCCTGAGAAGTTTAAAGACATGCCCTACCAGCCTTTCAGTAAAGGAGACAGACTGGGAAAG
>TCONS_00050146
AGGTGGCTGACTGGACTGGTGCAACATACCAGGATAAGAGATACACAAATAAATATTCATCTCAGTTTGGAGGCGGCAGTCAGTATGCTTACTTCCATGAGGAGGATGAGGCGAGCTTCCAGCTGGTGGACACTGCCAAGACTCAGAAGACTGCCTATCAGAGAAACCGGATGCGATTTGCTCAGAGGAACCTCCGGAGAGACAAAGACCGCAGGACTCTTACTCAGTTCAATATGCAGACCCTGCCTAAGAGCGCCAAGCAGAAGGAAAGGGACCGTATGCGCCTGCAGAAGAAATTCCAGAAGCAATTTGGTGTGCGACAAAAGTGGGATCAAAAGTCACAGGCTCAGCTCAAGCCCAGAGACTCCTCTGTTGAGGTGCGCAGTGACTGGGAGGTGAAGGAGGAGATGGACTTCCCCAGGCTCATGAAGATGAGATACATGGATCCAGATTAATCTGAGCATGGAGAACGCCTGGGGGATCCTTCGCTGCGTGATCGACATCTGCCGCAAGCTGGAGGAGGGCAAATACCTCATCCTTAAAGACCCCAATAAGCAAGTCATCAGGGTGTACAGCCTGCCTGATGGAACCTTCAGCTCAGATGAAGACGAGGAGGAAGATGATGAGGACGAGGAGGATGAAGAAGAGGACGAAGACAATTAAGCTGTCATTATCTACCACAGCTGTCTGCATTCTGTGTTTCAAAGCTGTCAGAGCTGAATAAAGATTTgagtattatt
>TCONS_00050147
CAAAGGGCAGAGAGTGCTGATGCTGAACATGATATGATTTAACTCAAGTGTTATTGCATTTGCATTTGTTCTAATATGCAGGGCTCTTGAAGTAGTATATATGTATTGCCTAGGTACAGTGTGAGTGGTTCAGGATTTTGTTGCATTCATTTGCTCTATAAGTCTCACTAGTTTTTGAGCTGAGTCGTTGCCAATAGATCTGCTGATCTGAATATACCATAAGGTGTTAAGCTGGTTAACATGTATTTTTTACTCACGGTGCTATTATAAACACTTAATTGTAAACCTATGTGTGAAAATGTCTGTTTTATGACATTTAACATGGTTGATTATTTGCAATGAAAGTTCATATGAggttatattgtttatatttgcttataattttatttcttatacttaaacaactgaatgtttatttatttatttatttttaaaaatgattcatatttcagataatttattttattaatattttaaaagctcttttGGTAATAAAGCTCACCGTGAGCGAGACTGCGAATGAGCCGCCTCAGGATGAGGGCAGTTCCCTCAACTCCCCCCGAAACCTGGCCATGGAGGCTACTTACATCAACCACAACTTCAGTCAGCAGTGTCTCCGCATGGGGGGAGAGAGATACAAGTTCCCCAACCCTAACCCATTTGTTG
>TCONS_00050148
CCAAGTTTCTCCTTAAAAAGCCCATGAGGAGAGTAAACTAATCCAAAAATAGGTTTATTTTACTTTCTCAAtggacaattattattattagctgtatgtatatataataatagcttgttttaaagaaaaaaacttcaattTGAcctctcaaaacaaacaaacgttTTTATTTGTCTATTAAATGCTTCTAGTTTGCAGAGTATAATTATAGATTTGACATTTCTTATGATTATTACTCAGCTGTAGTGTTATTGCAGTATCAAGATATTTGGCAAAATGAAAAAGTCTTTTCtcttgtatatatgtgtatataaaataaaccaTGCATTGAGTAAATATGACAAGCATTGTTTAAAACACTTGCACAGCTTCTCTGTGTTCATTTTAGCTGCAATAGCAAGCCAGTAGGAATTACCTTGGCAACTTCAATGTACTTCTCTGCCGTAATCTGCTTAGTTATGAAAGCGTAACTCCTGTTTCGTGTTGTTTTACAGCAAGTCATCAGGGTGTACAGCCTGCCTGATGGAACCTTCAGCTCAGATGAAGACGAGGAGGAAGATGATGAGGACGAGGAGGATGAAGAAGAGGACGAAGACAATTAAGCTGTCATTATCTACCACAGCTGTCTGCATTCTGTGTTTCAAAGCTGTCAGAGCTGAATAAAGATTTgagtattattcata

Function

symbol description
eif3d Predicted to enable mRNA cap binding activity and translation initiation factor activity. Predicted to be involved in cap-dependent translational initiation. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Orthologous to human EIF3D (eukaryotic translation initiation factor 3 subunit D).

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0002191 cap-dependent translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0098808 mRNA cap binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-030131-8442 Predicted to enable mRNA cap binding activity and translation initiation factor activity. Predicted to be involved in cap-dependent translational initiation. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Orthologous to human EIF3D (eukaryotic translation initiation factor 3 subunit D).

Ensembl:

ensembl_id ENSDARG00000021257

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050142 False 1892 mRNA 0.51 17 29640837 29654923
TCONS_00050143 False 823 nonsense_mediated_decay 0.51 8 29640994 29654697
TCONS_00050144 False 1811 mRNA 0.51 16 29640996 29654922
TCONS_00050145 False 315 mRNA 0.46 2 29641181 29642116
TCONS_00050146 False 740 nonsense_mediated_decay 0.50 8 29642200 29654921
TCONS_00050147 False 666 processed_transcript 0.36 3 29648122 29649158
TCONS_00050148 True 683 processed_transcript 0.34 2 29654160 29654925

Neighbor

gene id symbol gene type direction distance location
XLOC_025417 NA coding upstream 543 29639984 ~ 29640294 (+)
XLOC_025416 sstr3 coding upstream 38358 29600917 ~ 29602479 (+)
XLOC_025415 rac2 coding upstream 96798 29510818 ~ 29544039 (+)
XLOC_025414 fam83fa coding upstream 154339 29469283 ~ 29486498 (+)
XLOC_025413 grap2a coding upstream 171978 29445473 ~ 29468859 (+)
XLOC_025419 CT573429.1 coding downstream 9432 29664357 ~ 29671653 (+)
XLOC_025420 NA coding downstream 32624 29687549 ~ 29710222 (+)
XLOC_025421 cacng2a coding downstream 59850 29714775 ~ 29845175 (+)
XLOC_025422 BX901883.7 coding downstream 226110 29881035 ~ 29895974 (+)
XLOC_025423 NA coding downstream 259519 29914444 ~ 29915357 (+)
XLOC_025429 BX649540.1 misc downstream 593814 30248739 ~ 30249036 (+)
XLOC_025412 BX649558.1 non-coding upstream 230878 29406013 ~ 29409959 (+)
XLOC_025411 NA non-coding upstream 242686 29393465 ~ 29398151 (+)
XLOC_025410 BX005369.1 non-coding upstream 473690 29167020 ~ 29167147 (+)
XLOC_025406 NA non-coding upstream 714762 28899129 ~ 28926075 (+)
XLOC_025424 BX901883.3 non-coding downstream 274657 29929582 ~ 29929887 (+)
XLOC_025426 NA non-coding downstream 311858 29966783 ~ 29967070 (+)

Expression


Co-expression Network