XLOC_025459 (snrnp70)


Basic Information

Item Value
gene id XLOC_025459
gene name snrnp70
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31925067 ~ 31933774 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050197
ATTTTAAGAAAGGAACGACTCGTTCAACTGGGTGAGAACACACGTTGGGTATTGTGTGGACcgaaatacacacaaaaataccGAGTGAATTAAAGAAATTCATGCACGAAGGTCTTCCACAGAAACACGCAAGAGGATTTTGGCCCGAAAATCGGAGATTTCGTTGGAGCCGAATGAAAAACTGAGGTGAACAATGACTCAGTTTCTTCCGCCGAACCTGTTGGCATTGTTTGCCCCGCGGGACCCCATACCGTTCCTGCCTCAACTGGGAAAGCTTCCTCACGAGAAACACCACAACCAGCCCTACTGCGGAATTGCTCCTTTTATCCGGCATTTTGAGgACCCCAGAGATGCCCCTCCACCCACAAGAGCAGAGACACGGGAGGAGAGACTGGAGAGGAAGAGAAGAGAAAAAATGGAGAGGAGGCAAGTTGTGGTTGAAGGAGAGCTGAAATTATGGGACCCACATAATGACGCTAATGCCCAAGGAGATGCGTTTAAGACCCTGTTTGTGGCTCGAATTAATTATGATACCACAGAATCCAAACTGCGGCGAGAGTTTGAGGTCTATGGTCCTATCAAACGGATCTACATTGTGTACAACAAGAAAACTGGAAAACCAAGAGGCTATGCGTTCATTGAATACGAGCACGAGAGAGACATGCACTCCGCCTATCTCTGATGGCTATTGGCCAGAGCTGGCTTGCAGATCATGATGATGGTTTTGATACATCTACACCCTACTACCACAGCTCAGTGTATGGTTGGTATGATGGGTTTGTATGATGGGTAAGATTTCTTTACACCCCTCATCTAATTATAGGTCGATTGGGTATACTAAATTCATTCTCATCTGCCCTGTTTTAGGGCTAAATGTAGGGCTGC
>TCONS_00050198
ATTTTAAGAAAGGAACGACTCGTTCAACTGGGTGAGAACACACGTTGGGTATTGTGTGGACcgaaatacacacaaaaataccGAGTGAATTAAAGAAATTCATGCACGAAGGTCTTCCACAGAAACACGCAAGAGGATTTTGGCCCGAAAATCGGAGATTTCGTTGGAGCCGAATGAAAAACTGAGGTGAACAATGACTCAGTTTCTTCCGCCGAACCTGTTGGCATTGTTTGCCCCGCGGGACCCCATACCGTTCCTGCCTCAACTGGGAAAGCTTCCTCACGAGAAACACCACAACCAGCCCTACTGCGGAATTGCTCCTTTTATCCGGCATTTTGAGgACCCCAGAGATGCCCCTCCACCCACAAGAGCAGAGACACGGGAGGAGAGACTGGAGAGGAAGAGAAGAGAAAAAATGGAGAGGAGGCAAGTTGTGGTTGAAGGAGAGCTGAAATTATGGGACCCACATAATGACGCTAATGCCCAAGGAGATGCGTTTAAGACCCTGTTTGTGGCTCGAATTAATTATGATACCACAGAATCCAAACTGCGGCGAGAGTTTGAGGTCTATGGTCCTATCAAACGGATCTACATTGTGTACAACAAGAAAACTGGAAAACCAAGAGGCTATGCGTTCATTGAATACGAGCACGAGAGAGACATGCACTCTGCTTATAAGCATGCGGATGGCAAAAAGATCGATGGTCGTAGAGTGCTTGTTGATGTTGAAAGAGGACGAACGGTAAAAGGATGGCGCCCCCGGCGACTTGGTGGGGGTCTTGGTGGCACAAGGCGAGGAGGCGCAGATGTCAACATCAAGCACTCTGGCAGAGACGACACATCTCGTTATGATGACCGACCAATTGGAAGTGATCGCGATCGGGATCGTGGTGAACGCCGTGAACGCAGTCGGGAACGTGATCGAGACAAGGAACGTGGAGAACGCAGACGTTCTCGGTCCAGAGAGAGACGCAGGCACACTAGGTCTCATGAGCGTGAGAGGGCCGCTGCAGGGGATGAGGCTGGGGGCAGCAGCCGACGACGAGAGAGGGAAAGAGAACGAGGTGGTGCTGGAGCTGGAGAAAGCAGAGAGAGGAGTAGAGACCGGGATCGAGATAGAGACCGCAAGAGAAGGAGCAGGAGCAGGGATAGGAAGAGAGACAGGGAAAGAGGAAAAGGTGCAGAAGGAGGGGAGGAAGGCATGGGCGGGCTAGTTGATGGCATGATGCCTGAAGGGGGAGATAGGGGCATAGAGGACCCCTTGGGTGGTGAACCAGGGCGAGGTGAGGAGGGAGGACCTGAAGGAGAGGAAAGGGGGAGGGATCGAGACAAAGACAGGGAAAGAGATCGTGATAGGAAGCGCAGCCATCGAGATAAAGATAGAGAAAGGGATCGGGACAGAAGGCGGGACAGGGATAGAGATCGTGACCATAAGCGAGACCGTGGAGATCGGGACCGTGGGGAGCGAAGGGAAGATCGACACATTACCTCCTCCGGAGATCATGAGGGTTTGGGTAATGGAGGTGAAGAAGGTGAAGAGCCAGTGCCACCGCAATCAGAAGAAGGTTCACAGGAtgggatgaggatgatgatgatggatcAGGATTCCATGCAGTCGGGAGAGGGCTATGCCTCCAATGAAAATGGGTACAGGATGGAGGCCCAGGGTGATGAGTACTAAAAGTGCCATCGTTGTGTGAATGATTGTAGGTTATCTAGATGTAATGTTGATTTGATCCACAAATATCTTCAACCATTATTTAATGCCTCCACCCTTTGCTTGCACTGTCCACAGCGTGTGAGTATTATACTGTACTAATAACAGCTGTCACTGAGAGAGCTTAGTGTCTCCCTGGTAAGAAGCGTCCTattgttaaaataaacattatgtaGCTAAACTGTgagcttttttatgtttttagctCTGGTAAACCTATTTCTGGGGCTTGGACTACAGTAAATAATTAGCTTAATGATGCATTTGAATTCCCTGTCTAACATTATTTTGATATCAAATGACCATAACTGGGAGGGGATTTCTTGACTGAAGCACTGTATTATAATACAGTGTAGTTTCAGTCAAAGATAAGTATTTGTTTGTTGGAGTTATTGGGGTTGTTTTAGTACTGTTATGTCCATTTTCATAGATGTTTGCGGAGTACAATAGTAACGTTTCATGGGTTAGTACATTTATCTGTAACATTCTTTTTGTATTGGTCTTCCCTTTAATTTCTCTGCTACTTTATTTTCATCATGTACATTTTGTTTCATATTTGGTCCTGTACATGGATCGTTTACAAATCGTACAGTTGCCCCTTATTTTACAGCAGGAACAAAGGCAGAAAATATGACACCTGCTTTTAAATGGGAATGTCTGCCATGGTCTCACAGAAATTGCTCTTAATTTTATGTATAGGTTTTTTCAGTTTGTATCTGGTCGTATTTGTTCTGCTTTAAATTCttgaataaatacttttttattgccgAA

Function

symbol description
snrnp70 Predicted to enable U1 snRNA binding activity and mRNA binding activity. Acts upstream of or within hematopoietic stem cell differentiation. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of U1 snRNP and U2-type prespliceosome. Is expressed in central nervous system; hematopoietic stem cell; and motor neurons. Human ortholog(s) of this gene implicated in disease of mental health and systemic lupus erythematosus. Orthologous to human SNRNP70 (small nuclear ribonucleoprotein U1 subunit 70).

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0005685 U1 snRNP cellular_component
GO:0071004 U2-type prespliceosome cellular_component
GO:0017069 snRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0030619 U1 snRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040825-2 Predicted to enable U1 snRNA binding activity and mRNA binding activity. Acts upstream of or within hematopoietic stem cell differentiation. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of U1 snRNP and U2-type prespliceosome. Is expressed in central nervous system; hematopoietic stem cell; and motor neurons. Human ortholog(s) of this gene implicated in disease of mental health and systemic lupus erythematosus. Orthologous to human SNRNP70 (small nuclear ribonucleoprotein U1 subunit 70).

Ensembl:

ensembl_id ENSDARG00000077126

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050197 False 885 mRNA 0.46 8 31925067 31928639
TCONS_00050198 True 2488 mRNA 0.47 10 31925067 31933774

Neighbor

gene id symbol gene type direction distance location
XLOC_025458 NA coding upstream 5936 31918162 ~ 31919131 (+)
XLOC_025457 strada coding upstream 7677 31897029 ~ 31917390 (+)
XLOC_025456 BX324157.2 coding upstream 55064 31851004 ~ 31870003 (+)
XLOC_025455 BX324157.1 coding upstream 136430 31788521 ~ 31788637 (+)
XLOC_025454 dcaf7 coding upstream 198118 31717261 ~ 31726949 (+)
XLOC_025460 lin7b coding downstream 119 31933893 ~ 31944709 (+)
XLOC_025461 zgc:193811 coding downstream 11830 31945604 ~ 31951295 (+)
XLOC_025462 kcnc3a coding downstream 19371 31953145 ~ 32053929 (+)
XLOC_025463 aldh16a1 coding downstream 146629 32080403 ~ 32098515 (+)
XLOC_025464 fthl27 coding downstream 165733 32099507 ~ 32100999 (+)
XLOC_025429 BX649540.1 misc upstream 1676031 30248739 ~ 30249036 (+)
XLOC_025449 NA non-coding upstream 685504 31231809 ~ 31239563 (+)
XLOC_025447 NA non-coding upstream 754193 31169219 ~ 31170874 (+)
XLOC_025446 NA non-coding upstream 819414 31097933 ~ 31105653 (+)
XLOC_025473 NA non-coding downstream 359999 32293773 ~ 32297003 (+)
XLOC_025475 NA non-coding downstream 412360 32346134 ~ 32347493 (+)
XLOC_025481 CR936975.1 non-coding downstream 540887 32474661 ~ 32477285 (+)
XLOC_025487 FP236454.1 non-coding downstream 637535 32571309 ~ 32571371 (+)
XLOC_025492 NA non-coding downstream 717923 32651697 ~ 32658436 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) LOC120558437 NA misc NC_053116.1 CM020913.1 13308360 ~ 13312729 (-)