Fish Transcriptome and Expression Database

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model fish

XLOC_025456 (BX324157.2)

Basic Information

Item	Value
gene id	XLOC_025456
gene name	BX324157.2
gene type	coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007114.7
NCBI id	CM002887.2
chromosome length	62628489
location	31851004 ~ 31870003 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050195
gaaaacaaaaacacaaaagatgagaaatgtgtacaaaggggaaaaagttttagtttttcaaCCAtcaaacaaacatgTACTTTCAGACCAAAATTAGCTTACCCGCGTCAAAGAttagta

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000115048

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00050195	True	120	mRNA	0.32	5	31851004	31870003

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_025455	BX324157.1	coding	upstream	62367	31788521 ~ 31788637 (+)
XLOC_025454	dcaf7	coding	upstream	124055	31717261 ~ 31726949 (+)
XLOC_025453	mylk5	coding	upstream	151706	31662126 ~ 31699298 (+)
XLOC_025452	fzd2	coding	upstream	226791	31621774 ~ 31624213 (+)
XLOC_025451	ccdc43	coding	upstream	245673	31600593 ~ 31605331 (+)
XLOC_025457	strada	coding	downstream	27026	31897029 ~ 31917390 (+)
XLOC_025458	NA	coding	downstream	48159	31918162 ~ 31919131 (+)
XLOC_025459	snrnp70	coding	downstream	55064	31925067 ~ 31933774 (+)
XLOC_025460	lin7b	coding	downstream	63890	31933893 ~ 31944709 (+)
XLOC_025461	zgc:193811	coding	downstream	75601	31945604 ~ 31951295 (+)
XLOC_025429	BX649540.1	misc	upstream	1601968	30248739 ~ 30249036 (+)
XLOC_025449	NA	non-coding	upstream	611441	31231809 ~ 31239563 (+)
XLOC_025447	NA	non-coding	upstream	680130	31169219 ~ 31170874 (+)
XLOC_025446	NA	non-coding	upstream	745351	31097933 ~ 31105653 (+)
XLOC_025439	NA	non-coding	upstream	902550	30943288 ~ 30948454 (+)
XLOC_025473	NA	non-coding	downstream	423770	32293773 ~ 32297003 (+)
XLOC_025475	NA	non-coding	downstream	476131	32346134 ~ 32347493 (+)
XLOC_025481	CR936975.1	non-coding	downstream	604658	32474661 ~ 32477285 (+)
XLOC_025487	FP236454.1	non-coding	downstream	701306	32571309 ~ 32571371 (+)

Expression

Co-expression Network