Fish Transcriptome and Expression Database

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model fish

XLOC_010492 (CU467865.1)

Basic Information

Item	Value
gene id	XLOC_010492
gene name	CU467865.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007127.7
NCBI id	CM002900.2
chromosome length	55266484
location	12012074 ~ 12012188 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020591
CCTAgtagccatatcaccctgcagcccaagaccagttactcactgaagctaagcggggctgagcctggtcagtacctggatgggagaccacataggaaaaaCGTTGCTGTTGGAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000113021

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00020591	True	115	rRNA	0.53	1	12012074	12012188

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_010491	NA	coding	downstream	6990	11992566 ~ 12005084 (-)
XLOC_010490	usp5	coding	downstream	25753	11965371 ~ 11986321 (-)
XLOC_010489	si:ch73-296e2.3	coding	downstream	48270	11960417 ~ 11963804 (-)
XLOC_010488	cd4-1	coding	downstream	65935	11911897 ~ 11946139 (-)
XLOC_010487	cxcr3.1	coding	downstream	152765	11853212 ~ 11859309 (-)
XLOC_010493	si:ch211-69g19.2	coding	upstream	39822	12052010 ~ 12060782 (-)
XLOC_010494	pex5	coding	upstream	52388	12064576 ~ 12097558 (-)
XLOC_010495	clstn3	coding	upstream	90148	12102336 ~ 12173647 (-)
XLOC_010496	lpcat3	coding	upstream	162249	12174437 ~ 12236362 (-)
XLOC_010497	CR388102.3	coding	upstream	227219	12239407 ~ 12239460 (-)
XLOC_010626	CR392024.2	misc	upstream	8882924	20895112 ~ 20895175 (-)
XLOC_010483	NA	non-coding	downstream	372602	11597384 ~ 11639472 (-)
XLOC_010482	BX005242.1	non-coding	downstream	473253	11437869 ~ 11538821 (-)
XLOC_010480	NA	non-coding	downstream	1000422	10980052 ~ 11011652 (-)
XLOC_010479	NA	non-coding	downstream	1092640	10917584 ~ 10919434 (-)
XLOC_010498	CR388102.2	non-coding	upstream	235674	12247862 ~ 12247920 (-)
XLOC_010499	CR388102.4	non-coding	upstream	238080	12250268 ~ 12250323 (-)
XLOC_010500	CR388102.5	non-coding	upstream	241227	12253415 ~ 12253471 (-)
XLOC_010507	CU694256.1	non-coding	upstream	512544	12524732 ~ 12532027 (-)

Expression

Co-expression Network