XLOC_010496 (lpcat3)


Basic Information

Item Value
gene id XLOC_010496
gene name lpcat3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 12174437 ~ 12236362 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020602
GGCGATGAACTGAAATGGTACGAGTGTTGCGCAAAAAAGGCGTTTGCGACATTAGAGAGTGAAGGTCGCCGGGTTCTTACTGAATGGTGTGAGAGGTGGCGAGAGGAGGAGTAGCGGGACGGACGGAGTAAAGGGCTGCGCGGAGTCTCACGAGGCCACACACTCGCGGAAACCCGAGCGCAGCTACTTCCGCCCACACTAAAGATGGCGGCTCCCTTCATGGAGAAATTAGCCGAATATTTAGATTCACCCGAACCGGCCGTTCGGCTGATTTTGTCCATCTTAATAGGTTATCCATTTGCACTGGCGTACCGCTGGTTTTTATTTCATCAATCCTCAACAGTTCTTCATCTCTTCCACACAATCACCGGGCTGGCACTGGCCACGTTTAATTTTGGGTCTCAGGTCTATCACTCGTTGTTATGTGTAGTCATTCAGTTCTTGTTGCTGAGGCTCATGGGAAGGACGGTCACATGCGTTCTGACTAGCTTTATCTTTCAGATGATATATCTGTTGACGGGTTATTACTACACCGCTACAGACGAGTATGATATCAAATGGACCATGCCTCATTGTGTCCTCACGCTCAAACTCATCGGTTTAGCGCTTGATTACTACGACGGTGGAAAAGATCAATCTAAATTGAGCGCAGAACAGAAGAAGTCTGCTCTCGGCTCTACGCCGTCTCTGTTGGAGGTGTTTGGTTTTTCATACTTTTATGGAGGCTTTCTGGTAGGGCCTCAGTTCACATTGCGAAATTACCAGATGCTAGTGTCTCGAGAGATGACCGATGTTCCAGGACAACCACCAAATAGTGTGGTTCCGGCACTGAAGCGTTTCTGTTTAGGGCTCATCACCCTCTCTATCTTTACGATAGGTGGGCCACGCTACTCAGACAGCTACTACTTAACGGATGAGTTTGCAGCACATCCTTTCTGGTACAAGTGTGTGTACATCCTATTGTGGGTGAAAATAAACCTGTATAAGTACATCAGCTGCTGGCTAATCACGGAAGGCGTGTGTGTTCTGGCTGGGCTGGGCTATAATGGGAAGAATGAAAAAGGGGAGCATCAGTGGGATGCCTGCGCAAATGTGAGGGTCTGGCTGTTTGAGACCACTCCGCTCTTCACGGGCACAATCAATTCCTTCAACATCAACACCAATGCTTGGGTGGCCAGGCATGTGTTTAAGAGGTTGAGGTTTTTGGGGAACAAGTTGGTGTCTCAGATGTTCACATTGTTATTCCTGGCGATCTGGCACGGCTTGCACTCAGGGTACCTCATCTGCTTCTCCTTGGAGTTCCTCATTGTCAATGTGGAGAAGCAGGCTCAGTCACTAGTGCGGGACAGTCCTTTGCTGACATCCATCTCTCAGAGTCCTCTGTATCCTCTTGTATATGTTGTACAGCAGTCTATTCACTGGCTCTTTATGGGATACTCTCTGGTGCCGTTCTGCCTCTTCACTTTCGACAAGTGGCTCAAGGTTTACTTCTCCATATATTTCTGTGGTCACATCTTTTTCATCGCTGCCTTACTTGTCCTGCCATACCTCCGCAAGGTGTTCGTGCCTCGAAAAAGAGGCAGTGAGAAAAAGGAGGATTAATTAAAAGGGTTTGTATGCTGCTGTCTGTGATGGACTGAAGTGAACTGTGACATTTAAAGAGCGCCTGAAGAGGACAAATTTTAAGGCCTTTAGTAATATATTACTATTTACATACAGCACTGATGTATGTGTACAAATGTTAGTCCGTTTGAAAGTTCTTCTCATTCTTTGGGATTCGTGGTGGACTGGGATGAAAAAGGTTTAAACTGCAGAAATAGAAGCATTTCTGAGGTTGGATATTGGTTGGATAAGGTTTAATGGCGGCTGAAAACAATTATACTGTATCCGCTCATACCATTGCACTCATTACTCAGTAATGATCTCGTTTCCTGTATAATCAGAGAACCAGCTTCGGCTGTCGCTGAGGTGAAGTGTGCACTTTTTCGGGGGGGTTGTTGAGCATGTATTCGAAAAATGGAAACAAATGagatcttcatttttttttttcttcctttactGGGATCTTTGTTTTAAACTCTCATACCTTTAGATTGAAAGAAGACAATGAAATGTGAAACACAAACATAAGAGTGAACAGTGACTGATCGTTCAGCATCGCCTGGCATTATAAATGAATGTTGTTCATTTTTATAACCGTTttcctgttttttgttttcagaCAAGCTCTGAAGGGTATTCGCGTTTAGTTTTTCAGGAAGGGGTTTTACGGTAACTGCGTTTTTATAGCTTTTTGACACACTTTCATAAGAAGGATCATCATTCTGTCATCTCATCCGCTCACTCCATTTAAcactgtctgtccatccatcttgACCTTTTCTTGTTCACTCCATTTTCTCCAGCAAATCCAGTGTATGAGCacaagcaaaacacacacacacatcacaataACATCAACACTACTTACCTGAATCATCAATATGAGCGTAAATGCGTGTGGATATTATCAAGAGCAGAGTATTGTTTCAATTATAGCAAGTATTTTGGTGAGCAATGAACTAAACAGTGCATAAAGATAGCACAAGTTAAAACTGCTGTTAATTTCACTAAATAAGTGCAAGGTTTTGTTTCGCAGTGAAGTGTTTTTATACCCAAAACACgtgttttatttttctgatcTGCTCTCAGTAATATCTACATATGTTTGCTTCATATCTGTTTTGTATGGCATGGCATATTGAAGATCCTTGGCACAAATAAACATCACTCATCGGTGAGGGCGAGATTGAAAATCTGCACCTAAATCCTATCCGAGGGAGCAGCAGAAGCTCACAGTAGCAtctgatttgttttataatatttatacacGTGGTCGCAAAGTTTAATGAtgtaaaaatttgtttttttgcGAAACAACTGCCTTACTGCTACCAAATgtacaaaaaatgaataaaaaatatagagaTAGAGTGAAAAACACAATTACTTTTAAATGAAACGTTTTtgtaatgttcattaaaaatgctggattttAACAAT

Function

symbol description
lpcat3 Predicted to enable 1-acylglycerophosphocholine O-acyltransferase activity and lysophospholipid acyltransferase activity. Predicted to be involved in lipid modification and phosphatidylcholine biosynthetic process. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human LPCAT3 (lysophosphatidylcholine acyltransferase 3).

GO:

id name namespace
GO:0006656 phosphatidylcholine biosynthetic process biological_process
GO:0030258 lipid modification biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0071617 lysophospholipid acyltransferase activity molecular_function
GO:0047184 1-acylglycerophosphocholine O-acyltransferase activity molecular_function

KEGG:

id description
ko00564 Glycerophospholipid metabolism
ko04216 Ferroptosis
ko01004 Lipid biosynthesis proteins

ZFIN:

id description
ZDB-GENE-041111-232 Predicted to enable 1-acylglycerophosphocholine O-acyltransferase activity and lysophospholipid acyltransferase activity. Predicted to be involved in lipid modification and phosphatidylcholine biosynthetic process. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human LPCAT3 (lysophosphatidylcholine acyltransferase 3).

Ensembl:

ensembl_id ENSDARG00000075178

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020602 True 3042 mRNA 0.43 13 12174437 12236362

Neighbor

gene id symbol gene type direction distance location
XLOC_010495 clstn3 coding downstream 790 12102336 ~ 12173647 (-)
XLOC_010494 pex5 coding downstream 76879 12064576 ~ 12097558 (-)
XLOC_010493 si:ch211-69g19.2 coding downstream 113655 12052010 ~ 12060782 (-)
XLOC_010492 CU467865.1 coding downstream 162249 12012074 ~ 12012188 (-)
XLOC_010491 NA coding downstream 169353 11992566 ~ 12005084 (-)
XLOC_010497 CR388102.3 coding upstream 3045 12239407 ~ 12239460 (-)
XLOC_010498 CR388102.2 coding upstream 11500 12247862 ~ 12247920 (-)
XLOC_010499 CR388102.4 coding upstream 13906 12250268 ~ 12250323 (-)
XLOC_010500 CR388102.5 coding upstream 17053 12253415 ~ 12253471 (-)
XLOC_010501 leng8 coding upstream 20165 12256527 ~ 12266153 (-)
XLOC_010626 CR392024.2 misc upstream 8658750 20895112 ~ 20895175 (-)
XLOC_010483 NA non-coding downstream 534965 11597384 ~ 11639472 (-)
XLOC_010482 BX005242.1 non-coding downstream 635616 11437869 ~ 11538821 (-)
XLOC_010480 NA non-coding downstream 1162785 10980052 ~ 11011652 (-)
XLOC_010507 CU694256.1 non-coding upstream 288370 12524732 ~ 12532027 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_05170621_05189845 LPCAT3 coding CI01000016 null 5169714 ~ 5189845 (-)