RNA id: TCONS_00020602


Basic Information

Item Value
RNA id TCONS_00020602
length 3042
RNA type mRNA
GC content 0.43
exon number 13
gene id XLOC_010496
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 12174437 ~ 12236362 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCGATGAACTGAAATGGTACGAGTGTTGCGCAAAAAAGGCGTTTGCGACATTAGAGAGTGAAGGTCGCCGGGTTCTTACTGAATGGTGTGAGAGGTGGCGAGAGGAGGAGTAGCGGGACGGACGGAGTAAAGGGCTGCGCGGAGTCTCACGAGGCCACACACTCGCGGAAACCCGAGCGCAGCTACTTCCGCCCACACTAAAGATGGCGGCTCCCTTCATGGAGAAATTAGCCGAATATTTAGATTCACCCGAACCGGCCGTTCGGCTGATTTTGTCCATCTTAATAGGTTATCCATTTGCACTGGCGTACCGCTGGTTTTTATTTCATCAATCCTCAACAGTTCTTCATCTCTTCCACACAATCACCGGGCTGGCACTGGCCACGTTTAATTTTGGGTCTCAGGTCTATCACTCGTTGTTATGTGTAGTCATTCAGTTCTTGTTGCTGAGGCTCATGGGAAGGACGGTCACATGCGTTCTGACTAGCTTTATCTTTCAGATGATATATCTGTTGACGGGTTATTACTACACCGCTACAGACGAGTATGATATCAAATGGACCATGCCTCATTGTGTCCTCACGCTCAAACTCATCGGTTTAGCGCTTGATTACTACGACGGTGGAAAAGATCAATCTAAATTGAGCGCAGAACAGAAGAAGTCTGCTCTCGGCTCTACGCCGTCTCTGTTGGAGGTGTTTGGTTTTTCATACTTTTATGGAGGCTTTCTGGTAGGGCCTCAGTTCACATTGCGAAATTACCAGATGCTAGTGTCTCGAGAGATGACCGATGTTCCAGGACAACCACCAAATAGTGTGGTTCCGGCACTGAAGCGTTTCTGTTTAGGGCTCATCACCCTCTCTATCTTTACGATAGGTGGGCCACGCTACTCAGACAGCTACTACTTAACGGATGAGTTTGCAGCACATCCTTTCTGGTACAAGTGTGTGTACATCCTATTGTGGGTGAAAATAAACCTGTATAAGTACATCAGCTGCTGGCTAATCACGGAAGGCGTGTGTGTTCTGGCTGGGCTGGGCTATAATGGGAAGAATGAAAAAGGGGAGCATCAGTGGGATGCCTGCGCAAATGTGAGGGTCTGGCTGTTTGAGACCACTCCGCTCTTCACGGGCACAATCAATTCCTTCAACATCAACACCAATGCTTGGGTGGCCAGGCATGTGTTTAAGAGGTTGAGGTTTTTGGGGAACAAGTTGGTGTCTCAGATGTTCACATTGTTATTCCTGGCGATCTGGCACGGCTTGCACTCAGGGTACCTCATCTGCTTCTCCTTGGAGTTCCTCATTGTCAATGTGGAGAAGCAGGCTCAGTCACTAGTGCGGGACAGTCCTTTGCTGACATCCATCTCTCAGAGTCCTCTGTATCCTCTTGTATATGTTGTACAGCAGTCTATTCACTGGCTCTTTATGGGATACTCTCTGGTGCCGTTCTGCCTCTTCACTTTCGACAAGTGGCTCAAGGTTTACTTCTCCATATATTTCTGTGGTCACATCTTTTTCATCGCTGCCTTACTTGTCCTGCCATACCTCCGCAAGGTGTTCGTGCCTCGAAAAAGAGGCAGTGAGAAAAAGGAGGATTAATTAAAAGGGTTTGTATGCTGCTGTCTGTGATGGACTGAAGTGAACTGTGACATTTAAAGAGCGCCTGAAGAGGACAAATTTTAAGGCCTTTAGTAATATATTACTATTTACATACAGCACTGATGTATGTGTACAAATGTTAGTCCGTTTGAAAGTTCTTCTCATTCTTTGGGATTCGTGGTGGACTGGGATGAAAAAGGTTTAAACTGCAGAAATAGAAGCATTTCTGAGGTTGGATATTGGTTGGATAAGGTTTAATGGCGGCTGAAAACAATTATACTGTATCCGCTCATACCATTGCACTCATTACTCAGTAATGATCTCGTTTCCTGTATAATCAGAGAACCAGCTTCGGCTGTCGCTGAGGTGAAGTGTGCACTTTTTCGGGGGGGTTGTTGAGCATGTATTCGAAAAATGGAAACAAATGagatcttcatttttttttttcttcctttactGGGATCTTTGTTTTAAACTCTCATACCTTTAGATTGAAAGAAGACAATGAAATGTGAAACACAAACATAAGAGTGAACAGTGACTGATCGTTCAGCATCGCCTGGCATTATAAATGAATGTTGTTCATTTTTATAACCGTTttcctgttttttgttttcagaCAAGCTCTGAAGGGTATTCGCGTTTAGTTTTTCAGGAAGGGGTTTTACGGTAACTGCGTTTTTATAGCTTTTTGACACACTTTCATAAGAAGGATCATCATTCTGTCATCTCATCCGCTCACTCCATTTAAcactgtctgtccatccatcttgACCTTTTCTTGTTCACTCCATTTTCTCCAGCAAATCCAGTGTATGAGCacaagcaaaacacacacacacatcacaataACATCAACACTACTTACCTGAATCATCAATATGAGCGTAAATGCGTGTGGATATTATCAAGAGCAGAGTATTGTTTCAATTATAGCAAGTATTTTGGTGAGCAATGAACTAAACAGTGCATAAAGATAGCACAAGTTAAAACTGCTGTTAATTTCACTAAATAAGTGCAAGGTTTTGTTTCGCAGTGAAGTGTTTTTATACCCAAAACACgtgttttatttttctgatcTGCTCTCAGTAATATCTACATATGTTTGCTTCATATCTGTTTTGTATGGCATGGCATATTGAAGATCCTTGGCACAAATAAACATCACTCATCGGTGAGGGCGAGATTGAAAATCTGCACCTAAATCCTATCCGAGGGAGCAGCAGAAGCTCACAGTAGCAtctgatttgttttataatatttatacacGTGGTCGCAAAGTTTAATGAtgtaaaaatttgtttttttgcGAAACAACTGCCTTACTGCTACCAAATgtacaaaaaatgaataaaaaatatagagaTAGAGTGAAAAACACAATTACTTTTAAATGAAACGTTTTtgtaatgttcattaaaaatgctggattttAACAAT

Function

GO:

id name namespace
GO:0006656 phosphatidylcholine biosynthetic process biological_process
GO:0030258 lipid modification biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0071617 lysophospholipid acyltransferase activity molecular_function
GO:0047184 1-acylglycerophosphocholine O-acyltransferase activity molecular_function

KEGG:

id description
ko00564 Glycerophospholipid metabolism
ko04216 Ferroptosis
ko01004 Lipid biosynthesis proteins

ZFIN:

id description
ZDB-GENE-041111-232 Predicted to enable 1-acylglycerophosphocholine O-acyltransferase activity and lysophospholipid acyltransferase activity. Predicted to be involved in lipid modification and phosphatidylcholine biosynthetic process. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human LPCAT3 (lysophosphatidylcholine acyltransferase 3).

Ensembl:

ensembl_id ENSDART00000114759

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020593 lncRNA downstream 120203 12052306 ~ 12054234 (-) False XLOC_010493
TCONS_00022129 lncRNA downstream 169353 11992566 ~ 12005084 (-) True XLOC_010491
TCONS_00022128 lncRNA downstream 211358 11961685 ~ 11963079 (-) True XLOC_010489
TCONS_00022127 lncRNA downstream 212944 11960630 ~ 11961493 (-) False XLOC_010489
TCONS_00020576 lncRNA downstream 394993 11775141 ~ 11779444 (-) False XLOC_010484
TCONS_00020617 lncRNA upstream 242335 12478697 ~ 12481849 (-) False XLOC_010505
TCONS_00020619 lncRNA upstream 268567 12504929 ~ 12512576 (-) False XLOC_010506
TCONS_00020621 lncRNA upstream 274824 12511186 ~ 12512593 (-) True XLOC_010506
TCONS_00020622 lncRNA upstream 288370 12524732 ~ 12532027 (-) True XLOC_010507
TCONS_00021787 lncRNA upstream 326868 12563230 ~ 12566004 (-) True XLOC_010508
TCONS_00020600 mRNA downstream 790 12106132 ~ 12173647 (-) False XLOC_010495
TCONS_00020599 mRNA downstream 883 12102336 ~ 12173554 (-) False XLOC_010495
TCONS_00020601 mRNA downstream 1038 12142148 ~ 12173399 (-) True XLOC_010495
TCONS_00020598 mRNA downstream 76879 12065218 ~ 12097558 (-) True XLOC_010494
TCONS_00020596 mRNA downstream 77043 12064576 ~ 12097394 (-) False XLOC_010494
TCONS_00020607 mRNA upstream 20165 12256527 ~ 12266153 (-) True XLOC_010501
TCONS_00020608 mRNA upstream 30004 12266366 ~ 12291045 (-) True XLOC_010502
TCONS_00020609 mRNA upstream 57922 12294284 ~ 12319822 (-) False XLOC_010503
TCONS_00020610 mRNA upstream 57927 12294289 ~ 12316979 (-) False XLOC_010503
TCONS_00020611 mRNA upstream 57927 12294289 ~ 12319822 (-) True XLOC_010503
TCONS_00020591 other downstream 162249 12012074 ~ 12012188 (-) True XLOC_010492
TCONS_00020572 other downstream 394965 11760919 ~ 11779472 (-) False XLOC_010484
TCONS_00020567 other downstream 1258033 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020565 other downstream 1337205 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020559 other downstream 1912812 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020603 other upstream 3045 12239407 ~ 12239460 (-) True XLOC_010497
TCONS_00020604 other upstream 11500 12247862 ~ 12247920 (-) True XLOC_010498
TCONS_00020605 other upstream 13906 12250268 ~ 12250323 (-) True XLOC_010499
TCONS_00020606 other upstream 17053 12253415 ~ 12253471 (-) True XLOC_010500
TCONS_00020613 other upstream 238499 12474861 ~ 12494417 (-) False XLOC_010505

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_05170621_05189845.mRNA True 2263 mRNA 0.43 12 CI01000016 5169714 ~ 5189845 (-)