Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00020621 |
| length | 899 |
| lncRNA type | retained_intron |
| GC content | 0.42 |
| exon number | 2 |
| gene id | XLOC_010506 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 12504929 ~ 12512593 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0061028 | establishment of endothelial barrier | biological_process |
| GO:0098803 | respiratory chain complex | cellular_component |
| GO:0005743 | mitochondrial inner membrane | cellular_component |
| GO:0005746 | mitochondrial respirasome | cellular_component |
| GO:0005747 | mitochondrial respiratory chain complex I | cellular_component |
| GO:0030964 | NADH dehydrogenase complex | cellular_component |
| GO:0044422 | obsolete organelle part | cellular_component |
| GO:0044428 | obsolete nuclear part | cellular_component |
| GO:0000346 | transcription export complex | cellular_component |
| GO:0000347 | THO complex | cellular_component |
| GO:0044446 | obsolete intracellular organelle part | cellular_component |
| GO:0019866 | organelle inner membrane | cellular_component |
| GO:0000445 | THO complex part of transcription export complex | cellular_component |
| GO:0032991 | protein-containing complex | cellular_component |
| GO:1990204 | oxidoreductase complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0045271 | respiratory chain complex I | cellular_component |
| GO:0043226 | organelle | cellular_component |
| GO:0043227 | membrane-bounded organelle | cellular_component |
| GO:0043229 | intracellular organelle | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0070469 | respirasome | cellular_component |
| GO:0098798 | mitochondrial protein-containing complex | cellular_component |
| GO:0005739 | mitochondrion | cellular_component |
| GO:0098800 | inner mitochondrial membrane protein complex | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-040426-1566 | Predicted to be part of respiratory chain complex IV. Predicted to be active in mitochondrion. Is expressed in brain; gill; heart; liver; and skeletal muscle. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to human COX6B1 (cytochrome c oxidase subunit 6B1) and COX6B2 (cytochrome c oxidase subunit 6B2). |
| ensembl_id | ENSDART00000155829 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00020617 | lncRNA | downstream | 29337 | 12478697 ~ 12481849 (-) | False | XLOC_010505 |
| TCONS_00020593 | lncRNA | downstream | 456952 | 12052306 ~ 12054234 (-) | False | XLOC_010493 |
| TCONS_00022129 | lncRNA | downstream | 506102 | 11992566 ~ 12005084 (-) | True | XLOC_010491 |
| TCONS_00022128 | lncRNA | downstream | 548107 | 11961685 ~ 11963079 (-) | True | XLOC_010489 |
| TCONS_00022127 | lncRNA | downstream | 549693 | 11960630 ~ 11961493 (-) | False | XLOC_010489 |
| TCONS_00020622 | lncRNA | upstream | 12139 | 12524732 ~ 12532027 (-) | True | XLOC_010507 |
| TCONS_00021787 | lncRNA | upstream | 50637 | 12563230 ~ 12566004 (-) | True | XLOC_010508 |
| TCONS_00020625 | lncRNA | upstream | 161637 | 12674230 ~ 12688953 (-) | True | XLOC_010509 |
| TCONS_00022130 | lncRNA | upstream | 928144 | 13440737 ~ 13480372 (-) | True | XLOC_010517 |
| TCONS_00020642 | lncRNA | upstream | 1026401 | 13538994 ~ 13542399 (-) | True | XLOC_010519 |
| TCONS_00020614 | mRNA | downstream | 14554 | 12477716 ~ 12496632 (-) | False | XLOC_010505 |
| TCONS_00020615 | mRNA | downstream | 19285 | 12478286 ~ 12491901 (-) | False | XLOC_010505 |
| TCONS_00020618 | mRNA | downstream | 22821 | 12484603 ~ 12488365 (-) | True | XLOC_010505 |
| TCONS_00020616 | mRNA | downstream | 23529 | 12478358 ~ 12487657 (-) | False | XLOC_010505 |
| TCONS_00020612 | mRNA | downstream | 41152 | 12335274 ~ 12470034 (-) | True | XLOC_010504 |
| TCONS_00020623 | mRNA | upstream | 157172 | 12669765 ~ 12689080 (-) | False | XLOC_010509 |
| TCONS_00020624 | mRNA | upstream | 157223 | 12669816 ~ 12688957 (-) | False | XLOC_010509 |
| TCONS_00020626 | mRNA | upstream | 198311 | 12710904 ~ 12723738 (-) | False | XLOC_010510 |
| TCONS_00020627 | mRNA | upstream | 198324 | 12710917 ~ 12723324 (-) | True | XLOC_010510 |
| TCONS_00020628 | mRNA | upstream | 245901 | 12758494 ~ 12784373 (-) | False | XLOC_010511 |
| TCONS_00020613 | other | downstream | 16769 | 12474861 ~ 12494417 (-) | False | XLOC_010505 |
| TCONS_00020606 | other | downstream | 257715 | 12253415 ~ 12253471 (-) | True | XLOC_010500 |
| TCONS_00020605 | other | downstream | 260863 | 12250268 ~ 12250323 (-) | True | XLOC_010499 |
| TCONS_00020604 | other | downstream | 263266 | 12247862 ~ 12247920 (-) | True | XLOC_010498 |
| TCONS_00020603 | other | downstream | 271726 | 12239407 ~ 12239460 (-) | True | XLOC_010497 |
| TCONS_00020641 | other | upstream | 1009706 | 13522299 ~ 13542460 (-) | False | XLOC_010519 |
| TCONS_00020651 | other | upstream | 1155573 | 13668166 ~ 13671219 (-) | True | XLOC_010526 |
| TCONS_00020657 | other | upstream | 1301377 | 13813970 ~ 13817940 (-) | True | XLOC_010529 |
| TCONS_00020665 | other | upstream | 1445163 | 13957756 ~ 13958885 (-) | True | XLOC_010535 |
| TCONS_00020674 | other | upstream | 1872727 | 14385320 ~ 14396699 (-) | True | XLOC_010543 |
