XLOC_010517


Basic Information

Item Value
gene id XLOC_010517
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 13440737 ~ 13480372 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022130
CATTGCTGGTTCATAGTGAGCGGTTCGAGGTGACAGAAACATGGAGTAATATTTTTTCGACGACAGCTTTGGGGCATTTGGCGATAACCAGCAAAGCAGGAGGAGCTTTGATCGCTGCCAACAAAAGTGACTTCAAACCTGTCAAGGCTTTCGACAAATCACCCAGAGACACCCTGCCCTGCCGACTGTGTTGACGGATTAGGAAAAATGTTTGGACATCATCATTCACAAGGGATTGGGTCACTTAAAATATCCAAAAAGCAGACGTTGTCCATTGGAGTGGGGTCATCGCCGAACACCTGCACAAGAGACATCAGACAGTGTGGTCAGACAAATCGAACAATAGTCATTTCTAAGGATGTACTCTGTGGAGGTCACAGTTCCCATCTACAAGAAACGTGAGTGGTGTGGCTACCACACACAAAATTAGTGACAAATAGCAAAACATAATATTCAGtgattctttctttcttgcaTGCAATGTGATGGAGTTTTATTAGAAGTACCGACTTTGAAACTTGTACAAAATAATGTACCAGAATTTTCCACATCTTTaacactgctgattggccatAGTGTTTAGACACTCAACAGATATGTCTGCCATCGGCTACAATTGTTATCGATTTATGCTTTTCACCTGTCTTGGATATCCAACAATCCTGTGTTCCATTTCTGACAGTTGAGCTAAACAGTAAACGATACATTTTGAAGCTCTCTTtcgatgtcatttaaaaaaaataaataaatgtacatatttgatCAACATTTTCCACTTTTAATGGCACTTCTAGTGAAAAGTTAGTACTGTAGTAAGCAGCTTTTCCCTTAGTTTTCACCAAAGTTATCTGCATTTAGTTGTTAAGCTAAATTGTTATGCTGACTCAGAAGTGTCTTAAATCAGTTTTACAAGATACATTCACGCACAAACACTTCCTAGAGAGATACTGCCTGATACATTGATACATGGACACTGAAGCATTTGAGAGCTGCATCTATCAACTGATCGGTCAGTGGATAGCTCATATATATTTGCTCACAAGAAGATCCTCTGATATACGTAGTTTTCAAACACTCTTGTAAATGTAATCTCATTTATCATTGT

Function

GO:

id name namespace
GO:0006750 glutathione biosynthetic process biological_process
GO:0019184 nonribosomal peptide biosynthetic process biological_process
GO:0017109 glutamate-cysteine ligase complex cellular_component
GO:0061980 regulatory RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022130 True 1105 lncRNA 0.39 3 13440737 13480372

Neighbor

gene id symbol gene type direction distance location
XLOC_010516 grin2db coding downstream 51916 13179146 ~ 13388821 (-)
XLOC_010515 prkcg coding downstream 330988 13020776 ~ 13109749 (-)
XLOC_010514 cacng7b coding downstream 436571 12963020 ~ 13004166 (-)
XLOC_010513 cacng8b coding downstream 486998 12882381 ~ 12953739 (-)
XLOC_010512 isoc2 coding downstream 630851 12793911 ~ 12809886 (-)
XLOC_010518 si:dkeyp-69b9.3 coding upstream 24692 13505064 ~ 13516745 (-)
XLOC_010519 BX323458.2 coding upstream 41927 13522299 ~ 13542460 (-)
XLOC_010520 NA coding upstream 64921 13545293 ~ 13551327 (-)
XLOC_010521 NA coding upstream 76549 13556921 ~ 13564275 (-)
XLOC_010522 ntd5 coding upstream 88325 13568697 ~ 13595027 (-)
XLOC_010626 CR392024.2 misc upstream 7414740 20895112 ~ 20895175 (-)
XLOC_010508 NA non-coding downstream 874733 12563230 ~ 12566004 (-)
XLOC_010507 CU694256.1 non-coding downstream 908710 12524732 ~ 12532027 (-)
XLOC_010500 CR388102.5 non-coding downstream 1187266 12253415 ~ 12253471 (-)
XLOC_010499 CR388102.4 non-coding downstream 1190414 12250268 ~ 12250323 (-)
XLOC_010498 CR388102.2 non-coding downstream 1192817 12247862 ~ 12247920 (-)
XLOC_010526 CR848741.1 non-coding upstream 187794 13668166 ~ 13671219 (-)
XLOC_010530 NA non-coding upstream 377300 13857672 ~ 13860564 (-)

Expression


Co-expression Network