XLOC_010530


Basic Information

Item Value
gene id XLOC_010530
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 13857672 ~ 13860564 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020658
AGATCCCAAGCCACGGAGCTTGCGGGAAATGTTGCCCTAGTCAAGAATCTTTTCCAGTAATCAGCATTAGCACTTATATTGTCTTGAGCTTAGGCCGCTGCTCATCCACAGTTTCTCCATTCTCCACTTTCTCTTCCTCCTCTAATGCCGGATTTCCTTGATCAGCTTCACTTGGTGTGGGGAAGATGCAGGGATGCTCTCCGAAAGCACAATCCAAACTGAGCCATCGCGTGAAGAGGGATGAGGTTGAGAATAGAAGACCTTCAGGTGATGACTCAACAGATGGAAAAGCAGAGAGATCTGGAAGTTCTAGGATTTTCTGTTTACAAAAGATGACAAATAACATTGAAGATCTCTCAGTAATcaataatgtaaatatgttgcTACAGCATTTTAAAATTATGCTATGATTATGGTAGGATAAAAAGGAGATGCAAATGTATGTAGAATTTATATATGACAGTACCTCTTTTGCTATGTTGTCCAATGTGTGCGTCAGCTCGCTGATGAACCCGTATTTGAGGTGAACTCTGTTGAGGTGTTGGAGGAGCTGAAGCCAAGAATGTGACAGGATTgcagcagcactgaacacacaacactacactcacacacacaaagacacaacaAATCAAAATTAGGTCTCGGTATTTAATAAAGTTTATAAAAACTGTCAAGATGAGTGACGATTTTTAAATTGACTCAGTGACAAATACAGGAGgctatagttttaaaaacacccTTACACATTGTTTTGGGTAAAATATGTTAAATTTCTGGGCGaagcagtatgtagtgctgtcgacttacagcaagaaggtcgctcacttggcgtttctgtgtggagtttgcatgttctccctgcatttgcatgggtttcctccgggtgctccggtttcccccacagtccaaagacat
>TCONS_00020659
AACCGGTCTGGCATTCGTGATACATGCGGTAAGCGGAGTGGTCCATCTCCAGCTCTTCTCCCGGCTGAAGCGGCTGCAGACCGGGCACATAGACTTTCTCCTGCCCGTCCCCGTTCTGTTCTTCTCCTTCCATATCATCCTCGTCGCTTTCACTCGCCTCCATGTCCTCAaactcatcctcctcctcctgcgGCAGCGTGTGTTCGTCGGACGCGGACATTTTGAGAAAGCGGCGGATTTCCGCTTCACGCCACGTGGTTTAAAGCGCTCGTCTGACGAGGCCGCTGCTCATCCACAGTTTCTCCATTCTCCACTTTCTCTTCCTCCTCTAATGCCGGATTTCCTTGATCAGCTTCACTTGGTGTGGGGAAGATGCAGGGATGCTCTCCGAAAGCACAATCCAAACTGAGCCATCGCGTGAAGAGGGATGAGGTTGAGAATAGAAGACCTTCAGGTGATGACTCAACAGATGGAAAAGCAGAGAGATCTGGAAGTTCTAGGATTTTCTGTTTACAAAAGATGACAAATAACATTGAAGATCTCTCAGTAATcaataatgtaaatatgttgcTACAGCATTTTAAAATTATGCTATGATTATGGTAGGATAAAAAGGAGATGCAAATGTATGTAGAATTTATATATGACAGTACCTCTTTTGCTATGTTGTCCAATGTGTGCGTCAGCTCGCTGATGAACCCGTATTTGAGGTGAACTCTGTTGAGGTGTTGGAGGAGCTGAAGCCAAGAATGTGACAGGATTgcagcagcactgaacacacaacactacactcacacacacaaagacacaacaAATCAAAATTAGGTCTCGGTATTTAATAAAGTTTATAAAAACTGTCAAGATGAGTGACGATTTTTAAATTGACTCAGTGACAAATACAGGAGgctatagttttaaaaacacccTTACACATTGTTTTGGGTAAAATATGTTAAATTTCTGGGCGaagcagtatgtagtgctgtcgacttacagcaagaaggtcgctcacttggcgtttctgtgtggagtttgcatgttctccctgcatttgcatgggtttcctccgggtgctccggtttcccccacagtccaaagacat

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0016073 snRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0008152 metabolic process biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0034471 ncRNA 5'-end processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0006396 RNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0044205 'de novo' UMP biosynthetic process biological_process
GO:0016180 snRNA processing biological_process
GO:0000966 RNA 5'-end processing biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0000460 maturation of 5.8S rRNA biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044452 obsolete nucleolar part cellular_component
GO:0070545 PeBoW complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0005732 small nucleolar ribonucleoprotein complex cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000171 ribonuclease MRP activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0140098 catalytic activity, acting on RNA molecular_function
GO:0140101 catalytic activity, acting on a tRNA molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020658 False 915 lncRNA 0.42 2 13857672 13860263
TCONS_00020659 True 1102 lncRNA 0.46 2 13857672 13860564

Neighbor

gene id symbol gene type direction distance location
XLOC_010529 leng9 coding downstream 39601 13810018 ~ 13818071 (-)
XLOC_010528 ttyh1 coding downstream 67764 13714058 ~ 13789908 (-)
XLOC_010527 ube2s coding downstream 176980 13672768 ~ 13680692 (-)
XLOC_010526 CR848741.1 coding downstream 186453 13668166 ~ 13671219 (-)
XLOC_010525 shisa7a coding downstream 195158 13636704 ~ 13662514 (-)
XLOC_010532 cdc42ep5 coding upstream 15303 13875867 ~ 13881156 (-)
XLOC_010533 rcvrn2 coding upstream 51128 13911692 ~ 13921589 (-)
XLOC_010534 si:dkey-85k15.4 coding upstream 95022 13955586 ~ 13965518 (-)
XLOC_010535 BX005429.1 coding upstream 97192 13957756 ~ 13958885 (-)
XLOC_010536 NA coding upstream 115816 13976380 ~ 14005609 (-)
XLOC_010626 CR392024.2 misc upstream 7034548 20895112 ~ 20895175 (-)
XLOC_010521 NA non-coding downstream 293397 13556921 ~ 13564275 (-)
XLOC_010520 NA non-coding downstream 306345 13545293 ~ 13551327 (-)
XLOC_010519 BX323458.2 non-coding downstream 315212 13522299 ~ 13542460 (-)
XLOC_010517 NA non-coding downstream 377300 13440737 ~ 13480372 (-)
XLOC_010539 NA non-coding upstream 227767 14088331 ~ 14090702 (-)
XLOC_010540 BX322530.1 non-coding upstream 233217 14093781 ~ 14167673 (-)
XLOC_010544 NA non-coding upstream 555782 14416346 ~ 14417407 (-)

Expression


Co-expression Network