XLOC_010528 (ttyh1)


Basic Information

Item Value
gene id XLOC_010528
gene name ttyh1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 13714058 ~ 13789908 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020653
CTCTTCCACGCTTCCCAAAAGCAGAGAGGTCACTCAGGGAGGTTCAGCAGATCCTCAACACCACCGAGGGAAACTTCCATCAGCTGGTTGCTCTTCTCAACTGTCGAGGCCTGAACAAGGATTACGTGGACTCTCTGAAAGGCCTGTGCTATGATGGGATGGAGGGGCTGCTCTATCTGTCTCTCTACTCTTTTCTCTCCGCTTTGGCCTTCACTGCTATTCTTTGCTCCCTCCCTGGAGCCTGGAGGAGCTTCCACAGTGATTCAGACGATTATGAAGACTCGGACAGTGAAAGCGAGGACCCCTTCACTTCTCATCAGGACTCCAAACGTTTCCTCCAATGGCAACCCTGGTTATGAGAACCTGCCTTTGAGTGACAGACAGTCCCCACCCCCCTCTTACTCTCCCAGCATGCTGACTGGCTACGGCGGCAGTCAATCACACTCCAACCCCTCCCATTCAAGAAACTTGTACTCGCACTAattatttttctgtataataGAAAAGAAAGCTATATAGCCAGGTTTAGTTTTCATATGGATGGACACTTTATGAGA
>TCONS_00020654
ATTACAGATTCTTGAGAAAAACAGAGGTGGATTACAGCAGCCATGGCGGCCATAGCAACAGTGCCCAACTACACCCCCTCAGTATGGGTACGGTTATGCCATGCCATCCCTCGCCTGAGCTTAACCATGCAGATGCGAGACAGCGTGTTCACTCCAGACAGCTGGGAGTACCAGCAGACTCTGCTAGTGTTGTCCAGCTTCTCTGCCATCGCTCTTGTACTCTCGCTGCTGGTGATTCTGTGTTTCCTCATCCACTACTGCTGCTGCCATCGGGGCGAATCAGGCAGAGATgcagaggaggaagaagaagatgatgatgccAGCGGTGGCCATGGTTACAGTGGCAAAAAGGGGCGGGGCATCTGCTGTGTCACATGGGTGTCGGTTGCAGCCGTCACATTGTGTTGTGTTGCCATAGGCGTTGGTTTCTACGGCAATAGTGAGGCGAACGATGGGATGTATCAGTTGACCTCATCCTTGCTCACTGCCAATTACACACTGGCGTCCATCGATCTTCTGGTTTCAGACACTATTTCCGGCCTCCAGCGGTCAGTCTCAGGGCCCTTGACCTCTATGGAGGATGTGTTTGGAGGACACAAACCAGCGCTGGTGCCCACGCGCTCTTGCAGGCGTCTGTCAGAGCGGGTCGTGTCTCTGCTCTCCAACCTGACACTGGGAAGAGGCCTGATCCCCATCGCAGATGGCTTTTACAGGACAAACGGAAGTGAAAGTATAGTGGGAGCCCTCACTCCTGCTCCACCTTCTGTAGCGCCAACCCTCAGTCCATCCGCCAACAGCATTCCTGCACCATTCTCTCCTGGATGGGCAGCAAACACCCTCATGGTGAATGAAGACTACAGGTGGCTGTCATATGTGCTGCTGCTTTTGGTGGATCTGGTGGTGTGTTTCTTCATTCTCCTGGGTTTAGCCAAACAGTCCCGCTGGCTACTTATTCTgatgACAGTGCTGGCCTGGTTGTCTCTGTTTATGAGCTGGGGTTCTCTGGGTCTGGAAACACCCACTGTGGTGGCCCTGAGTGATTTTTGCTTTGACCCAAACACATTTGTGCTCAACTCCACTCACTTCAACTCTGGGACAAGCCCAGAAGTCCTGGATTATTTCCTAACCTGCAGCAGGAAGATGAGCAGCCCTTTCCAACAGATACTGACCCAGTCCCAGAGAGCACTTTCCAGCATCCACTCTCATCTTTCCAGCCTGGAGAGAGATGCTCTTCCACGCTTCCCAAAAGCAGAGAGGTCACTCAGGGAGGTTCAGCAGATCCTCAACACCACCGAGGGAAACTTCCATCAGCTGGTTGCTCTTCTCAACTGTCGAGGCCTGAACAAGGATTACGTGGACTCTCTGAAAGGCCTGTGCTATGATGGGATGGAGGGGCTGCTCTATCTGTCTCTCTACTCTTTTCTCTCCGCTTTGGCCTTCACTGCTATTCTTTGCTCCCTCCCTGGAGCCTGGAGGAGCTTCCACAGTGATTCAGACGATTATGAAGACTCGGACAGTGAAAGCGAGGACCCCTTCACTTCTCATCAGGCACGTAGACAGACGGCCACGGGCTCCCAGCGAGGGGCTTTGCCCCCCTTCTATAGTTACCAGGGGGCCGCCTGGACTCCCCCCTTTTCTAGCGCACCTCCATTACCGACTCCAAACGTTTCCTCCAATGGCAACCCTGGTTATGAGAACCTGCCTTTGAGTGACAGACAGTCCCCACCCCCCTCTTACTCTCCCAGCATGCTGACTGGCTACGGCGGCAGTCAATCACACTCCAACCCCTCCCATTCAAGAAACTTGTACTCGCACTAattatttttctgtataataGAAAAGAAAGCTATATAGCCAGGTTTAGTTTTCATATGGATGGACACTTTA

Function

symbol description
ttyh1 Predicted to enable intracellular calcium activated chloride channel activity and volume-sensitive chloride channel activity. Predicted to act upstream of or within chloride transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of chloride channel complex. Predicted to be active in plasma membrane and smooth endoplasmic reticulum membrane. Orthologous to human TTYH1 (tweety family member 1).

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0006821 chloride transport biological_process
GO:0034707 chloride channel complex cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030868 smooth endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005229 intracellular calcium activated chloride channel activity molecular_function
GO:0005254 chloride channel activity molecular_function
GO:0072320 volume-sensitive chloride channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-257 Predicted to enable intracellular calcium activated chloride channel activity and volume-sensitive chloride channel activity. Predicted to act upstream of or within chloride transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of chloride channel complex. Predicted to be active in plasma membrane and smooth endoplasmic reticulum membrane. Orthologous to human TTYH1 (tweety family member 1).

Ensembl:

ensembl_id ENSDARG00000076804

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020653 False 557 mRNA 0.50 6 13714058 13730152
TCONS_00020654 True 1887 mRNA 0.53 14 13714063 13789908

Neighbor

gene id symbol gene type direction distance location
XLOC_010527 ube2s coding downstream 33366 13672768 ~ 13680692 (-)
XLOC_010526 CR848741.1 coding downstream 42839 13668166 ~ 13671219 (-)
XLOC_010525 shisa7a coding downstream 51544 13636704 ~ 13662514 (-)
XLOC_010524 si:dkeyp-69b9.6 coding downstream 90130 13616239 ~ 13623928 (-)
XLOC_010523 dbpb coding downstream 100583 13599693 ~ 13613475 (-)
XLOC_010529 leng9 coding upstream 20110 13810018 ~ 13818071 (-)
XLOC_010530 NA coding upstream 67764 13857672 ~ 13860564 (-)
XLOC_010531 NA coding upstream 68999 13858907 ~ 13859312 (-)
XLOC_010532 cdc42ep5 coding upstream 85959 13875867 ~ 13881156 (-)
XLOC_010533 rcvrn2 coding upstream 121784 13911692 ~ 13921589 (-)
XLOC_010626 CR392024.2 misc upstream 7105204 20895112 ~ 20895175 (-)
XLOC_010521 NA non-coding downstream 149783 13556921 ~ 13564275 (-)
XLOC_010520 NA non-coding downstream 162731 13545293 ~ 13551327 (-)
XLOC_010519 BX323458.2 non-coding downstream 171598 13522299 ~ 13542460 (-)
XLOC_010517 NA non-coding downstream 233686 13440737 ~ 13480372 (-)
XLOC_010535 BX005429.1 non-coding upstream 167848 13957756 ~ 13958885 (-)
XLOC_010536 NA non-coding upstream 186472 13976380 ~ 14005609 (-)
XLOC_010539 NA non-coding upstream 298423 14088331 ~ 14090702 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_05843077_05863364 TTYH1 coding CI01000016 null 5842120 ~ 5863364 (-)