XLOC_010539


Basic Information

Item Value
gene id XLOC_010539
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 14088331 ~ 14090702 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022133
attttttttgcaatgtagtggaaaatatgtttattatgtttCTTGTTGTCTTGGCATGTTACAGTTTGAATAGGATATTTATTTACCACCTCAATATaagaaacaaatataatattttacagcTTCTATTGTTAAACTAGTGTACAATCAGAACACAATACAATGGACATTAGTAAACAAATGCCATGAACACGtcttacaaaaatacaataaaagataCATTTTCTAATCATTATTTTCACTGTAGGAATTTCctgtaaaacataataatttctGAATTAAGTTTTTTAGTTCTCGAAGCATCTCACTTAAATGGCACTAAAACGCAATATTTCACAGGAAAACTCAGTAATGTTCACAGTCACTGATAAACGTCTTACAACAACTATTACTGTTTAACTACACAAAGTAGTGTGAAATCAGAACATAATAAAATAACTGTTATAATAAATGAATTGGTATTCttctaacaataataaaaaaatgtaattatttacatAGCaaggattattttttttgtgaaactcATCGGTTCCTTAATCAGCAACAAGTGCTACTAGTTCTCAGATAATTTCACTACATTCAGACCGACATTTTTATCTCaatgttttttaatgaatttgatCCGAAAACTAAACAATCCTCACTGTGACGACTTACATTTCTTCATGTGTCTGAGAAGACTTGATAAAAATCGAAAACTCTTCTGACATGGAGGACAGTAgtaaggcttctctccagtgtgaattcgctCGTGTGATTTCATTGCTGAAGATTGACTGAATCTCTTGTCACAATATGAGCACTTgtacggtttttctccagtgtgaattcgtTGGTGCCGTTTCACATTGCCAGCTGTAGTAAAGCTCTTCCCGCACTCTAAACACACATGATCTCTCTTGCCACTGTGTGTTTTCTGGTGCTGCTTGCAGTTGCCACGATGTGAAAATCTCTTTTCACAGAACAGACATGCATAAGGCTTCTCATCTGAGTGAACTATCATGTGTTGTTTTAGACTTGATGCTGATATAAAACTACGACCACACTGAGAGCAGGTAaaaggcctctctccagtgtgaattcgctCATGTGATTTCATTGCTGAAGATTGACTGAAACACTTGTCACAATATGAGCACTTAtacggtttttctccagtgtgaattagTAGGTGCCGTTTCACATGGCCAGCTGTAGTAAAGCTCTTCCCGCACTCTAAACACACATGATCTCTCTTGCCACTGTGTGTTTTCTGATGCTGCTTACATTCACCACGACGTGAAAATCTCTTTTCACAGAACAGACATGCATAAGGCTTCTCATCTGAGTGAACTATCATGTGTTGTTTTAGACTTGATGCTGATATAAAACCAcgaccacactgagtgcagGTAaaaggcctctctccagtgtgatttCGGTGGTGCTGATTTAGATGGCCAGCTGTAGTAAAGCTCTTCCCGCTCTCCAAACACTCATGATCTCTCTTGCCACTGTGTGTTTTCTGGTGCTGCTTACAATCACCACGACGTGaaaattttttttcacagtaccAGCATACGTAAAGCTTCTCATCTAAGTGAATCACCATGTGTTGCTTTAGCTTTGATGCTGACCTAAAACCATGACCACACTGAGTACAGGTAAATGGCTTCTCTCCAGAGTGAACATTTAGATGATTGGTAAGCTTACTATTTTTtctgaagctctttccacacagaGTACAGTAGTAAGGCTTCTCTTCAGTGTGAATTCGCTCATGTGACTTCATCTTCAACGAATCACTGAAACTCTTGTCACAATATAAGCACTTGTGcgttttttctccagtgtgaatttgTCTGTGCTGTTTCAGATGTCGAGCTTTAGTGAAGCTCTTCCCGCACTCCAAACACTCATGATCTctcttttcttcatgtgttttctGGTGCAGTTTATAACTGTCAAGCCAtgaaaaactctttccacattcaGTGCAGATGTACAGTTTCTCTCCAACGTGAGTATCTATGTGCATGTCGAGTTTCACTTTTtttctgaaactctttccacacagaGGACAGGTGTGCGGACGTTTTGTCTTTGTTCCTTGAGTCTTGAAGTTGCGCTTCCCATCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022133 True 2120 lncRNA 0.38 2 14088331 14090702

Neighbor

gene id symbol gene type direction distance location
XLOC_010538 trim109 coding downstream 13737 14064397 ~ 14074594 (-)
XLOC_010536 NA coding downstream 82722 13976380 ~ 14005609 (-)
XLOC_010537 si:dkey-85k15.6 coding downstream 95685 13987735 ~ 13992646 (-)
XLOC_010534 si:dkey-85k15.4 coding downstream 122813 13955586 ~ 13965518 (-)
XLOC_010535 BX005429.1 coding downstream 129446 13957756 ~ 13958885 (-)
XLOC_010540 BX322530.1 coding upstream 3079 14093781 ~ 14167673 (-)
XLOC_010541 rnf115 coding upstream 140704 14231406 ~ 14248892 (-)
XLOC_010542 itga10 coding upstream 185662 14276364 ~ 14353567 (-)
XLOC_010543 crabp2a coding upstream 292777 14383479 ~ 14397003 (-)
XLOC_010544 NA coding upstream 325644 14416346 ~ 14417407 (-)
XLOC_010626 CR392024.2 misc upstream 6804410 20895112 ~ 20895175 (-)
XLOC_010530 NA non-coding downstream 227767 13857672 ~ 13860564 (-)
XLOC_010531 NA non-coding downstream 229019 13858907 ~ 13859312 (-)
XLOC_010526 CR848741.1 non-coding downstream 417112 13668166 ~ 13671219 (-)
XLOC_010545 BX324006.2 non-coding upstream 331098 14421800 ~ 14443389 (-)
XLOC_010551 CT573793.2 non-coding upstream 1617502 15708204 ~ 15709144 (-)
XLOC_010552 CT573793.3 non-coding upstream 1688457 15779159 ~ 15780407 (-)

Expression


Co-expression Network