XLOC_010522 (ntd5)


Basic Information

Item Value
gene id XLOC_010522
gene name ntd5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 13568697 ~ 13595027 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020644
CATAACCTCTGCACCGAGAGTCCGGGAAAGATGGAGCGATCTCTGCTCgtggcttttgtgtgtgtgtgggcccTCAGCAGCCTGTCTGCAGCATCAGAAGATGCAGCGGAGCAGTGCCCAGAAAGAATACTGGGTAACGAGAGAAGACAGACATGCCCAAAAAAGTGTCAGCAAGATAAAGACTGCGGCAACAAACGCCAGTGTCTCTGCGATGGCCAGTGTGGACTCAGCTGTGTGGTCCCAGGTCGTATGTGTCCGTGGCCTCTACCGCTTGGAAAACATTCTGATATAGTTCTCCTTTCCCCTTCACCCTCTTTCTCTGCCCTGCTTGAGGTTCGTTGTAAGTCTGGGTACACCTTGTCAAACGGACTGGACACTACAATACGCCGCTGCCAAGGTGACCGGCAATGGAGTGGAGATGAGCCTGTTTGTTCGGCCCCCCCAGGTGGAGATGTTTCAGCAGGGCCGGGTCTGGTGCCTGATGTGTCCTGTTCATTGCCTGAAGATGATGATCTGCTCTCTGTGCAGGGCAGTGCCACCACGGGATCCACTATCAAGTACCGATGTGCATCTGGATCTGTGCTGATTGGAAATAGTGAGAATATCTGTCATGAGAACCAGACGTGGCAATACCCTCACCCCATCTGTCGccGTGTGGTTTGTCCTCCTCCTAAGGAGGTTGCTGATCGTGGACATCTGGTGGCCGTCCAGAGAACTGAATATGATGTTGGTGACACTATCTATTACCTGTGCAAAAAGACCTTCTTGTTGGATGGACCAAATCAAGTGACGTGTCTACCTAATGGGACTTGGAGTGCAGAGCCTGCTTGTAGAGCCCGCTGCCCAGTTCCAGCTCAGCGCAGCAGGGTGATCGTGGGAGGAGTAAAGCGCTGGCCATATGATCTGACGGATGGTGTGGTTGCTCATGGAGAGAATGTGACATTTTTCTGTAAACATCCAGAAAAACTGTGCAGCTTTACTGCCACTGAGGTCTGCGTAGATGGGGAGTTAAAGGCACCTAGCTGCTACCTTGATCCTACCTGGCTGCAGTTCAAGCTTTACCCTCATCGACTGGTTTCTGAGATTGACGCATGTGATCGTGCAGATCTTCAGTGATCTCATCAAAATATGTTCATATTGGCACATGACTCTCAATCTGACTCAAGTCTGGTTTAACATAAATTGTCTTAATGTGCCAACTACTTTTTGATTTTCCGGACAGGATCTCAGCAGGATCTCACATGCGTGCCTCGTCTAACTCTTATGTCttctatttgatttttttctattGTTGCTTTGACAAAGTTACCTTAAACAGAGTTTATGTCATATCTGATGTATGCAAACACCCTCATACTTGCTGGAGGTTGTGGATGCTATTAGCTGCTCCCTTGTTATGTCGTCGTACAAAGTGTAAAACTGCTTTAGAAGTAACTCTGGCGTTTATCTTATTATATTTCTGTGTTAAAAGTGTTTTAGCTGATACATTCGTCAGTCACACAAGTGCTTCCAGGCTCCAAAATTGTGCCATGTTGTGATTCTTTCTAGATTTACTTCATTCCAAAAGCAGTTTTATGAAATATATAGCATTAACTGAACTTTGACTGAACTGTTTGACTGGATTACATGAAGAGTAGAGTTGATCTGTGTGTATTATAGCATAAAAAGCCTTGCTGAAGCAGCTTTGCTGAATGATTGCTTTCATAAAGGATTTTTTGAATGTATTTTCCTCTCCATATCTTATAAATCTACAATAAAGAAACTGGAACATGTGTGTTGTCATTAAAA

Function

symbol description
ntd5 Predicted to enable heparin binding activity and peptidase inhibitor activity. Predicted to be located in extracellular region. Is expressed in several structures, including axis; chordo neural hinge; fin; hypochord; and mesoderm.

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0030414 peptidase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031030-7 Predicted to enable heparin binding activity and peptidase inhibitor activity. Predicted to be located in extracellular region. Is expressed in several structures, including axis; chordo neural hinge; fin; hypochord; and mesoderm.

Ensembl:

ensembl_id ENSDARG00000040944

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020644 True 1788 mRNA 0.46 8 13568697 13595027

Neighbor

gene id symbol gene type direction distance location
XLOC_010521 NA coding downstream 4422 13556921 ~ 13564275 (-)
XLOC_010520 NA coding downstream 17370 13545293 ~ 13551327 (-)
XLOC_010519 BX323458.2 coding downstream 26237 13522299 ~ 13542460 (-)
XLOC_010518 si:dkeyp-69b9.3 coding downstream 51952 13505064 ~ 13516745 (-)
XLOC_010517 NA coding downstream 88325 13440737 ~ 13480372 (-)
XLOC_010523 dbpb coding upstream 4666 13599693 ~ 13613475 (-)
XLOC_010524 si:dkeyp-69b9.6 coding upstream 21212 13616239 ~ 13623928 (-)
XLOC_010525 shisa7a coding upstream 41677 13636704 ~ 13662514 (-)
XLOC_010526 CR848741.1 coding upstream 73139 13668166 ~ 13671219 (-)
XLOC_010527 ube2s coding upstream 77741 13672768 ~ 13680692 (-)
XLOC_010626 CR392024.2 misc upstream 7300085 20895112 ~ 20895175 (-)
XLOC_010508 NA non-coding downstream 1002693 12563230 ~ 12566004 (-)
XLOC_010530 NA non-coding upstream 262645 13857672 ~ 13860564 (-)
XLOC_010531 NA non-coding upstream 263880 13858907 ~ 13859312 (-)
XLOC_010535 BX005429.1 non-coding upstream 362729 13957756 ~ 13958885 (-)
XLOC_010536 NA non-coding upstream 381353 13976380 ~ 14005609 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_05765402_05775268 NTD5 coding CI01000016 null 5764776 ~ 5775297 (-)