RNA id: TCONS_00020596


Basic Information

Item Value
RNA id TCONS_00020596
length 2699
RNA type mRNA
GC content 0.51
exon number 15
gene id XLOC_010494
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 12064576 ~ 12097558 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGGCCACACGGGGAAGGTAAATAAAGACAGGACGGTCACCAGCGCAGCATTTTTAGCCGTCAGACCCCGACAACTAGAGGACCGTCCACCGCTGCCGTGTCTTTAGGGCCTGCTTTCCTCGGTCGGGTTTGGTCTTTGTTTTAACCGCATTACTCACGGGATAAAAGGCGaaagagaagaaaaagaggtGACAACGTCGCCTGTGCAGATATCTTAAGGTGCTAGTTTGATCCAGCCTGAGGGTGTGTTACCATGGCGATGCGGGAGTTAGTGGAGGCGGAATGTGGGGGAGCCAATCCCCTCATGAAACTGACTGGTCACATGACCCAAGAGGGCGGGGCTTGGAGACATCGATCAACGCCCACTATTCCTCCTACTCCCATTGAAATAGCCACTGAAGAAGAGCTGGTCAGTGAGTTTCTGCAGGGTCCACAACGGCCTCCTCATAGTTTTGATATGGGTCAACTGCTGGAGGAGATGCAACAGATTGATCAGCAGAACTACAGACAGGCTCCACAGAGAGCTCCCGATGTGGCAGCTCTGGCTCTGTCTGGCGACTGGGCATCAGAGTTTCTGTCTACTGCTGATGCCGCCTCTTCTTCTGGACAGGCAGCTCTTGATCCAGCCGATGCCGACTGGACCAGAGAATTTATCAATGAAGTGGCAGATCCGGGCCGCTGGGCAGAGGAGTACCTGGAGCAGTCAGAGGAGAAGCTATGGCTGGGAGATTTGGGAGAAAGAGAACAGGACAAAGAATGGGCTCAAGAATACCAGTCAGGTGAAGAACTACGTCAAACCGCAAATGAACTTGTTGCCAAAGTGGACGATCCTAAACTACAGAACACAGAGGTTTCGGCAGAATCGGCGGAGTCTTGGGTCGATGAATTCGCCACCTACGGGCCAGACTTCCAGCAGGCCAAAGCAGCGGTCGAGaGCGATGTTGATTTCTGGGAGAAGCTCCAGCAGGAGTGGGAGGAAATGGCCAAGAGGGATGCTGAAGCTCACCCCTGGCTCTCAGACTTTGACCAGATGCTCAGCAGCTCTTACGACAAGGGATATCAGTTTGAGGAAGACAACCCCTACCTGTCCCATGAGGATCCGTTTGCAGAAGGGGTGAAGCGGATGGAGGCGGGAGACATTCCTGGAGCTGTGCGCCTTTTCGAGAGCGCCGTTCAGAGACAGCCAGACAACCAACTGGCCTGGCAATATCTGGGCACCTGCCAGGCGGAGAACGAGCAGGAGTTTGCTGCCATCAGCGCCCTCCGGAGATGTATAGAGCTGAAAAAGGACAATCTGACGGCTCTAATGGCTCTTGCTGTGAGCTTTACCAACGAGTCGCTTCACAGACAGGCCTGCGAGACGCTCCGGGACTGGTTGAGGCACAACCCCAAATACAGAATCATCCTGGAGCAGCATGAGCGAGAGAAGCAGAGGGAGGgggcgagggagagagagaaagagagtgaaagATTTGGATCCCTTCTGCCAGAAGCACTGTTTGGTGAAGTGCAGACGTTGTTTCTGAATGCAGCGGCGGCTGAGCCCTCGCAGGTGGACCCGGAGCTGCAGTGTGGTCTGGGTGTTCTCTTTAATCTGAGTGGAGAGTATGACAAGGCTGTGGACTGTTTCTCTGCCGCACTCTCTGTCACACCACAGGATTATCTGCTGTGGAATAAACTGGGAGCGACTCTAGCTAACGGGAACCGCTCGGAGGAGGCGGTCGCTGCTTATAGACGTGCGCTGGAGTTACAGCCTGGATTTGTACGCAGCCGATACAACCTGGGCATCAGCTGTGTCAACCTGGGGGCACACAGGGAGGCAGTGGAGCACTTCCTGGAGGCGCTTTCTCTGCAGCGACAGGCTGCAGGTGATGGAGAGGCCGGTGCTGGACGAGGGCCTGGTGCTGCAGCCACCATCATGTCGGACAACATCTGGTCCACACTACGCATGGCACTGAGCATGATGGGAGAAAGCTCACTCTATTCCGCCGCCGACAGGCGAGATTTggacacactgctgacacacttCTCCCACAGAGAAGGAGAGGCGGAATGAAGGACGATATGGTGCGGGTGTGGAGACGCCTGTTTGGGAGAGGAAACCAGAAGACTGAGGTGTACATTTCAACAAGAGGGGCTTGACTTTTAGAGGCGCTACAGTAGACGGAGAACAAACAGCCATTTAGCTCCAGCACTGAAGAATAAACTGATAAACTGCCCTTGAGGGAAAACCTATGGTACAGTTTAACTACACCACAATATTGCTGCATTTCTGTCACAAGTTTACGCTTACCGTTGTAATTTTTGCATTAATCTTGAAGATTACGGTTCTTTCCATTGATCAGATTTACAGCGATATTTCTCATATAGGGAAAATATGATCCACGCACTGTGAGCTCAAATGATACTTGCTTCTGTTTGAAACAGAGACGAAGGATGTGGAGATATAATTGTTCTATATCACTACGAGCCCCGTGTAATCCGCAAGTTATGTTGGCTGAGAGGAGGAAGAGTTGTGAGACTAATAGACGTGTCTGTAAGCACTCTTTATTATCACATATTTGCTGTAAATTAATTTGCTTAATTGTAAATTCTACTTGCCATATTGTGTAGTGTACcataattattaatgttttgcATATAGCCAATTCAAGTTGCTCTGATATATGTAATTCAAGCAATAAAGCTTTGACAAAAA

Function

GO:

id name namespace
GO:0016560 protein import into peroxisome matrix, docking biological_process
GO:0005778 peroxisomal membrane cellular_component
GO:0005829 cytosol cellular_component
GO:0005052 peroxisome matrix targeting signal-1 binding molecular_function

KEGG:

id description
ko04146 Peroxisome
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-981 Predicted to enable peroxisome matrix targeting signal-1 binding activity. Predicted to be involved in protein import into peroxisome matrix, docking. Predicted to be active in cytosol and peroxisomal membrane. Human ortholog(s) of this gene implicated in peroxisome biogenesis disorder 2A; peroxisome biogenesis disorder 2B; and rhizomelic chondrodysplasia punctata type 5. Orthologous to human PEX5 (peroxisomal biogenesis factor 5).

Ensembl:

ensembl_id ENSDART00000103944

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020593 lncRNA downstream 10342 12052306 ~ 12054234 (-) False XLOC_010493
TCONS_00022129 lncRNA downstream 59492 11992566 ~ 12005084 (-) True XLOC_010491
TCONS_00022128 lncRNA downstream 101497 11961685 ~ 11963079 (-) True XLOC_010489
TCONS_00022127 lncRNA downstream 103083 11960630 ~ 11961493 (-) False XLOC_010489
TCONS_00020576 lncRNA downstream 285132 11775141 ~ 11779444 (-) False XLOC_010484
TCONS_00020617 lncRNA upstream 381303 12478697 ~ 12481849 (-) False XLOC_010505
TCONS_00020619 lncRNA upstream 407535 12504929 ~ 12512576 (-) False XLOC_010506
TCONS_00020621 lncRNA upstream 413792 12511186 ~ 12512593 (-) True XLOC_010506
TCONS_00020622 lncRNA upstream 427338 12524732 ~ 12532027 (-) True XLOC_010507
TCONS_00021787 lncRNA upstream 465836 12563230 ~ 12566004 (-) True XLOC_010508
TCONS_00020595 mRNA downstream 3794 12052310 ~ 12060782 (-) True XLOC_010493
TCONS_00020594 mRNA downstream 3806 12052306 ~ 12060770 (-) False XLOC_010493
TCONS_00020592 mRNA downstream 4088 12052010 ~ 12060488 (-) False XLOC_010493
TCONS_00020590 mRNA downstream 78255 11965371 ~ 11986321 (-) False XLOC_010490
TCONS_00020589 mRNA downstream 78255 11965371 ~ 11986321 (-) True XLOC_010490
TCONS_00020599 mRNA upstream 4942 12102336 ~ 12173554 (-) False XLOC_010495
TCONS_00020600 mRNA upstream 8738 12106132 ~ 12173647 (-) False XLOC_010495
TCONS_00020601 mRNA upstream 44754 12142148 ~ 12173399 (-) True XLOC_010495
TCONS_00020602 mRNA upstream 77043 12174437 ~ 12236362 (-) True XLOC_010496
TCONS_00020607 mRNA upstream 159133 12256527 ~ 12266153 (-) True XLOC_010501
TCONS_00020591 other downstream 52388 12012074 ~ 12012188 (-) True XLOC_010492
TCONS_00020572 other downstream 285104 11760919 ~ 11779472 (-) False XLOC_010484
TCONS_00020567 other downstream 1148172 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020565 other downstream 1227344 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020559 other downstream 1802951 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020603 other upstream 142013 12239407 ~ 12239460 (-) True XLOC_010497
TCONS_00020604 other upstream 150468 12247862 ~ 12247920 (-) True XLOC_010498
TCONS_00020605 other upstream 152874 12250268 ~ 12250323 (-) True XLOC_010499
TCONS_00020606 other upstream 156021 12253415 ~ 12253471 (-) True XLOC_010500
TCONS_00020613 other upstream 377467 12474861 ~ 12494417 (-) False XLOC_010505

Expression Profile

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