RNA id: TCONS_00020599


Basic Information

Item Value
RNA id TCONS_00020599
length 6932
RNA type mRNA
GC content 0.45
exon number 20
gene id XLOC_010495
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 12102336 ~ 12173647 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttttttctgtcacgGCATCCGCCGAAAACGAGGGCATTGGTGACTTGGTTTCTTATTTTCGAATTACAGTTTGCCTCCTTTTCGCAGTCCAGCTCATTTCGGGAGGCACCGGAGGCCCCAGTGCTCCACCCGTTGCGTTCAGGCGGGTATCAGACTGTCATAGGTGTGAGTGTGTGACGGATGCTTGGAGGACACTGAGCAGGGTACCATCTCACACACCTCACGATGGCCAGAATGAGTTTCCTATCCTTTCTCCTCTTTTGCTTGACTTCGGTTGCCCATGGCAACAAAGCCAATAAACACAAGCCATGGATCGAGACGGAGTATCAAGGCATCGTCATGGAAAACGACAACACTGTCCTTCTCAACCCACCTCTGTTCGCCCTGGATAAAGACGCACCTCTGCACTATGCAGGGGAGATCTGTGGGTTTAGGGTTCACAATGGACCAGGTGGTTCTGGTTCGGCGCAGTTTGAGGCAGTGGTGCTGGATCGCTCCACTGGGGAAGGTCTGGTTCGATCCAAAGAGCCTCTGGACTGTGAAAGCCAGAAGGAGCACAGCTTTACCATCCAGGCGTATGACTGCGGTGAAGGTCCTGACGGCACCAACAGCAAGAAATCCCACAAGGCCACCGTGCATGTTCGTGTCAATGACGTGAATGagttttctcctgtgtttgtgGAGCGCCGGTATGAAGCGTCAGTGCCAGAGGGTCGTCTGTTTGATCGTATCGTGCGAGTGGAAGCTGTAGATGCCGACTGCTCTCCTCAGTATAGCCAGATCTGCTTCTATGACATCATCACACCCAACGTCCCATTCACCATTGATAATGACGGGAACATAAAGAACACGGAGCCACTGGACTCCAAACGGCAGCGTGTGCACAGTTTCTGGGTCACAGCATTTGACTGTGGGAAGAATCGAGCTCAGGCTGATGCTCAGGTCATAGTCACTGTCAAACCTTCCTGCAAACCAGGCTGGATCGGATGGACAAAGCGCATCGAGTACACTCCTGGCTCCGGTAGCATCCCTCTGTTTCCAAACCTGCACCTGGAGACCTGTGAGGAAACAGTCTGGAACATCCAGGCCACCGTTGAGCTTCAGACCAGTCACATCGGGAAGGGCTGTGACAGAGACAGCTACTCCGACCGCTCTGTGCGCAGACTCTGTGGTGCAGTGAGAGGTGAAGTGGACCTCCTGCCACCACCATCTCCTGCGACCAACTGGACAGCTGCGCTGCCGACTCTGCCCTCCTCCgattcttcgctggtgttttctTTTAACGGCTCCACTCATGTTGCTGTAGTGCCCGATTCAGTGGCTTCAGCAGTGTCCGGCGATCACTTCACCCTGCAGCTATGGATGAGACGAGGAGGAGCCAGCACTCAGCCACCAGCCAATCAGGCGAGAGGAACCCGCAAAGAGGAGGAGACTATTGTCTGCAGCACTGTAAAGAATGATGACTCGTACTCTCACTACTCTCTATCTGTTCATGGCTGTCGTCTGTCTCTCTTCTACTGGCCGGATGTGTCCGCCGCCAGACCCGTCAAATTCCTCTGGAAACTGGAGCAGGTGTGTGACAGCGAGTGGCATCATCTGTCTCTGAGTGTCCAGTTCCCCTCTGTCACCCTCTATGTGGATGGTGTAACGTTTGACCCGGCTCTCATCCACGACAACGGAGCCATTCCCAACCCCGCACCACACCAGCGGCTGGTCATCGGAGCCTGTTGGGATGATTTGTGCAGAACGTCAGAACGTGAAGACGACAACTCCCAGGATTCAACACTCAATCACAAGCCAGAGGAGAAACCGAAAGACATTGTGAACAACACCATGCCAGAGAATAAAGACACAGGGCTTTTGTCAGGCGTGACGGTGCGTCCGGGAAATGTGGAGCCACACAGTGTTGTGGAGTGTCTGTATGCCTGTCGAGAGGGGCTGGATTTCGGAGACCTTGAGACTTTGGGCTCAGGCATGAAGGTGCATGTGAACCCGAGTCAGTCAGTGCTGGTGTTAGAGGGAGACGACATTGAAAGCTTCAACCGTGCCGTTCAGCAGGTGACATACAGAAACTCTCTACGATTCGCCACTCCTGGTGTCCGACCACTCAAACTCACCACCTCTCTCAGGTGTTTCAGTGAGGAGAGTTGTCTCTCTCTCAGACAGCTGGAGGGTTACCTGGTCGTTCTCCAGCCTGACGCACCTCAGATCTCCCTCTCCGGGGTGGGACCCCATCTGGCCCGTCCAGCTGCTGAGTTTGAGGGTCCTCAAGGGGTTCCCTTGTTCCCTGAGCTCCGAATCGTCTGCTCCTTGTCTCACGCTGTGAACACAGCTGCTCAGGGCATGGAGGGAGGGGCGCTGATGTCAGACGCCGTCGCTCACACTCTGGATGGGTGTGAAGTCCAGCCCTTGGGGGAGGAGCTAAACACTGAGAGGGAGGAGCTTCTGGTTGACATGGAGTCTTTGAGAGAGAGGGGGCTCGACATCATCAACACAACGGCCTACATTGCCATTACTGGTGCGGAGTCTATCTCTGTGTATGAGGATGTGCTACGCTCTATTCACTATCGCTTAGCAAAGGGCTCAGCTCGTTTTGAACGAAGGTTTCGTCTGTCGTGCTCAGAAATGAATGGTCGCTACACCAGTAATGAGCTCACATTGGAGGTAAACTTCCTGCACTCTCTGGACAGTCTCTACCACCCGTCTCACCTGCTGGCATCTCAGCAGCAGTTCCTCCATCCATCCCATCACACTGGAGAACTGAGCGGACACACGCTTCCCAACCCACACCGCAACTCAGTGGTTCCAGGAGCTGCCACTGTCATCATCATGGTGTGTGTGGGTTTCCTGGTTGTCATGGTGATTCTTGGAGTTTTTCGCATTCGCTCCATCCACCGCCGTGGTGAAGGAGCAAGAGGTGGAGGCAAGGAGGGCGGTAACCAATGGGATGATTCGGCCCTCACCATCATTGTGAACCCAATGGAGACATATGAGAACCGTATGGGGATCACAACAGACATGGAAGGAGAGTGTGAGGATGAGGAAGAAGTCGTGGATTCACCCGATGACACCAGTGATGACCAGCGAATCATCATCAAGAAAGAGGGAAGAGACTCCGCCCCTAGGCGCTACTGAACCAATTGATGACACCCGCATACTAAACACCTCCCACTCATTTAATTAcaggaatacacacacacacacacacacacacagacgcaccatcaaagaaaatgaaagtgtCTAACACAACTGAGACACGATTATAGGATCTCAGCCTCAGTGAATGCAACGCTTCTCTCTGGAATGTACGCTCCCACAATGCACAGCGCATTCCCTCTCAACCCAGATGTATTTATTAATGGCACACTTATATGTTCGTTCATTATACAGCCTTTCCAACTGACGTGCTTACTAAAGTGTTTTAAACACAGGATTGACACTAATTGTTAACGCTAATTGTTGTCAACGAATTAACACTGAAATATAACTAAAGACCCCGATATACTGAAAGTTATAGCGAAGAATAAATTGATGTGACGTCATATTTTATAATATCATGCCAAAAACAAAGTTCGTAATACCACTTGCCAAAACAAACATCTGGAAAAGTTTGCTTATGTTCGAAACTACTTTCTAATTACTGTCTGCTTGTTGAGTGTGACTTCATGTGAAtctgcttccgggtccaagccctCTATCAAACTGCACAGGGAGACTCGTCAAATggtaaacgtttacaaagcgatgtaatacttttgaaaatcacaatcaaatatatatatatatatatatccatgcctaatattcgatgaccagaaagtgatacattttttataaattgttaaaatattggtgtctgtgatgcagtcGTGTATACaacgattttatataaaattcattaAAGTTGAATTGACTAAAAGGTGGTCATAAACGAATACtttcttaattaaaatgagtaactgcttggacccggaaacagaaTTCCGGACGTCACGACTAAACAAGCGGATTGGTCCATTCCATGGTGATTACATAATCAGTAGGTGTGGCTTTGAGGTTCCGCCTTTGTGGTCTTAGAAATCTTCtcagatttatttttagtttacgTCATCACACACtagaacaggggttctcaacctttttcacttcgaggCCCACCTttgtctttaaattttttttgaaggCCTAAACTGATTGTctagagaaaatgcttattttaaagctatatatacaccttttttaatattatataaaatatagtaagttttttgttgtttttttaacgcAGAAAGGTGCAAAACTCCTGAATTCTTCAGTTAATCTTTACAACTGCAGAGTGTTTGGGCCTTTTCTACAGTTAAGGAACCTGACAGGACTACAGGAGATGGcaaaaaaaactgctgctgctGACTTCTATTAATCTATTTATCTATATCCACTAAAATAAACATccctaaatgtaaaatacagtaaaaaaaaaaaaaaactaaatctgttgaaacacatCAATCTGAAGGCGGTTGGGTTGGTAGCTGGACATTATTGGAGttcgctgacaggaacagtgtCTCCAGTCTCGCTGGATCCTCCTGTACTAATGAGCAGCAGTTATAAAACACTTACAAGACGTTAATTTGGACAATGAGGATATTATAAAGTGTTCACACAAAGAGAGCACGTATAGTTTGTAAATCAACAGACTTGTGTAACTCTGATTCAGTACGAGTCGCAAACATGAGGCGCGCTCGAGCTGGCTATTATAATCATTGTTACCTTTACATTTGCGTGACAGTTTGCTTATACAAGAACATGGACCCAGTTGACACGCAGCGGTTAAAAAATTTAAACCACAGTTATGTCTGTAATTAACAGTGAAGCTGTTTTTGCAGTCCAAATTAGCCTGTTCAATCACAAAAATCGGGAAATGCCATTACTACTATCATTTTAATATgccatttttaattatgaaatcaaatagaatagtatttaagttaattttaatttatctCGCAGCCCACCTGCAAATCGCTgaggcccaccggttgagaatcccttcACTAGAAAGCTGCATCATATTAGAGAagcttttaaaagaaataataatactgtaGTATGATATTTTGAGGTGGCacggtggcacggtggctcagtggctagcactatcgcctcacagcaagaatgttccTGGTttagagtcccggctgggccagttggcatttctgtgtggactttgtatgttctccccgtgctcgctccgggtgctccggttagccccacagtccaaagacatacggtataggtgaattggccgtagagtttgagtgtgtgtgtgaatatgagtgtgtatgagtgtttcctagtactaggttatggctggaagggcatccgccgtgtaaaacatatgctggaataattggcgattcattccgctgtggtgacccctaataattaagggactaagtgaaagaaaaataaatgaatgatattttgTATTGATCTTATTCTTTCACGTATGAGCAGGCACAGCCATCGAAATTTTATTGGCTTAGAACTTCCagtttcattcacttccattgatttttttaGCTGTAagaacagcttgttatgctgcttgatgttgcaaacttgtattttcttattataaaaattttatttttatgtatagccataaacacttgtttgtagatgAAGTAGTTTGATCATTCACTGCCGTTTGTTATTCCCAGTCATTTCCTGCATAGAGAAATGAAAGCTTAACAAGTAgatcaaataaacaatacttgATTGAAGTGCCGAATTGCGCAGCTAAATCCACTTTTCCCCAATCTGATGCTTCCTTAACAACTGTTTTCTCTCTGTCGCTGTCATTCCTTGTGTTTACTTCATTATTTACATAAATGCCACACTCTAGTTGCTACATAGTTGCAAATGTAAAGCGAAGTTCGCAGTGAGTATATCGGGGCCTTAATATTACGTGTAGTGCCCAGTACAAAACACTCCTGTAGCTGTATTTCCTCTGCACAATCTGTCTCGATACATTCCTTGACAAACTCCCTTGTACAGATATAAAGGATTAGTCCGTAAAGGTGTTTCGTCATAGTGATAGACTACAGCTAGGTATGCAAGTGCTTTCTTTTAAGCATCACaatacacacgcgcgcacacaccgATCTTTTGTGCAACTCTTCTCACAACCTCACGACAAACACAACGCCCTCTGCTGTATCAGAATGTTCGCTCAACCTGGGCAGTTTTGATTGTacttaaatgtatgtaaatacaaatgactactactattattatcatttaattttttgggtCATTTTCAGTCTTTGCACTTTCGGATAGGCTAGGTATTTCTTTTTCGAATATCTCTGTTGGTAATATACAGtgataatgacaataatagtattaGTAATAAGAGCGGTAACGATTGGCTTGATGAAtgtctatttatttgtgtgttcaaTCGTGTAATTAATATCACAGTGAAACGGAAAGGCACATTATTGTTATGCCTAGAACACTTTTCACCTCTGCTGTCATCTTCCCTTCTTCTCTCTCCTGACACTCTTTAGATACACGCTGCTTTATTTCgcctttttttttggttttctgaATGTACGACCGTGCCACCCGTCCTCCTTTCAGCTCGCactcctctctctttctccctgtgACTATTTCTCTGTCTGTGTTAGTGTACAGTGGAAACCTGTCAGTAAATAAAGGCCTGTTGTTTTTGCAGTGTGATATTAAGAATGGATACAATTTGCATTAATAAGCTATATTATTACAATGGTTACCATTGGGACAATTAACTATACTTATAGACACAATGACATGAATTATATGGATTGATTGTTATTGATAACCGTCTGAAGAAGTAATATGTtcaaaaaaattcataataaaaacACATGGACGA

Function

GO:

id name namespace
GO:0051965 positive regulation of synapse assembly biological_process
GO:0050806 positive regulation of synaptic transmission biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04515 Cell adhesion molecules

ZFIN:

id description
ZDB-GENE-100921-73 Predicted to enable calcium ion binding activity. Acts upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in Golgi membrane; cell projection; and synapse. Predicted to be integral component of membrane. Predicted to be active in cell surface and postsynaptic membrane. Is expressed in forebrain; hindbrain; midbrain; spinal cord; and telencephalon. Orthologous to human CLSTN3 (calsyntenin 3).

Ensembl:

ensembl_id ENSDART00000110567

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020593 lncRNA downstream 48102 12052306 ~ 12054234 (-) False XLOC_010493
TCONS_00022129 lncRNA downstream 97252 11992566 ~ 12005084 (-) True XLOC_010491
TCONS_00022128 lncRNA downstream 139257 11961685 ~ 11963079 (-) True XLOC_010489
TCONS_00022127 lncRNA downstream 140843 11960630 ~ 11961493 (-) False XLOC_010489
TCONS_00020576 lncRNA downstream 322892 11775141 ~ 11779444 (-) False XLOC_010484
TCONS_00020617 lncRNA upstream 305143 12478697 ~ 12481849 (-) False XLOC_010505
TCONS_00020619 lncRNA upstream 331375 12504929 ~ 12512576 (-) False XLOC_010506
TCONS_00020621 lncRNA upstream 337632 12511186 ~ 12512593 (-) True XLOC_010506
TCONS_00020622 lncRNA upstream 351178 12524732 ~ 12532027 (-) True XLOC_010507
TCONS_00021787 lncRNA upstream 389676 12563230 ~ 12566004 (-) True XLOC_010508
TCONS_00020598 mRNA downstream 4778 12065218 ~ 12097558 (-) True XLOC_010494
TCONS_00020596 mRNA downstream 4942 12064576 ~ 12097394 (-) False XLOC_010494
TCONS_00020597 mRNA downstream 7192 12065218 ~ 12095144 (-) False XLOC_010494
TCONS_00020595 mRNA downstream 41554 12052310 ~ 12060782 (-) True XLOC_010493
TCONS_00020594 mRNA downstream 41566 12052306 ~ 12060770 (-) False XLOC_010493
TCONS_00020602 mRNA upstream 883 12174437 ~ 12236362 (-) True XLOC_010496
TCONS_00020607 mRNA upstream 82973 12256527 ~ 12266153 (-) True XLOC_010501
TCONS_00020608 mRNA upstream 92812 12266366 ~ 12291045 (-) True XLOC_010502
TCONS_00020609 mRNA upstream 120730 12294284 ~ 12319822 (-) False XLOC_010503
TCONS_00020610 mRNA upstream 120735 12294289 ~ 12316979 (-) False XLOC_010503
TCONS_00020591 other downstream 90148 12012074 ~ 12012188 (-) True XLOC_010492
TCONS_00020572 other downstream 322864 11760919 ~ 11779472 (-) False XLOC_010484
TCONS_00020567 other downstream 1185932 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020565 other downstream 1265104 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020559 other downstream 1840711 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020603 other upstream 65853 12239407 ~ 12239460 (-) True XLOC_010497
TCONS_00020604 other upstream 74308 12247862 ~ 12247920 (-) True XLOC_010498
TCONS_00020605 other upstream 76714 12250268 ~ 12250323 (-) True XLOC_010499
TCONS_00020606 other upstream 79861 12253415 ~ 12253471 (-) True XLOC_010500
TCONS_00020613 other upstream 301307 12474861 ~ 12494417 (-) False XLOC_010505

Expression Profile

//