XLOC_010503 (trpv6)


Basic Information

Item Value
gene id XLOC_010503
gene name trpv6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 12294284 ~ 12319822 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020609
GTTGTCCtccaacagacaaacaaacatgcTATTCATCAGTTACTAAAATTACATTGGGACTACGTATTTAGGATTTTTGCAAGTCTTGTTGGTCTCGGTGTCCTCCTGAAATCATGCCACCCGCCATATCTGGTGAAATAAACCACTGGTGGAGACAAATGCGGTTCCGCCTTCAGCATAAAAAGGGATGGAATGAAATGTTGGATGAGACCTTCCTAATGCAGACCAAAAGAGTAAACGACATCCCACTGTTTTCCGCCACTAAGGAGAATAATGCAGCCTGCATAAAGAAACTGCTTGACTGTTCATCTACTGATATCTTTGAGAGAGGTGAGCTTGGAGAGACAGCTCTGCATGTTGCTGTGATGAATGATAACTTTGAAGCAGCGGTGGCTTTAATGAATGGAGCCCCGGAGCTCATCAACGAGCCCATGACATCTGAACTCTACCATGGTTTAACAGCCCTTCACATCGCTGTGATTAATCAGAATCCTAACTTAATCTGGGAGATGATAAAAAGAGGAGCTGATGTGACGACACCCAGAGTCACAGGCATGTACTTCCGCAAAAGAAGAGAAGGCCTGTTTTACTATGGTGAACACATCCTGGCATTTGCAGCCTGTGTGGGTAATAAAGACATTATGTCCATGCTGATAAAAGCTGGGGCTAATATTCGGGCTCAAGATTCCCGGGgcaacacCATCCTGCACCTGTTGGTTTTGCAGCCCAATAAAACAACTGCATGTCAGATATTTGACTTCTTGCTGGCTCAGGATGCAGAACAGGACTCTGCTCTTCCTCTAGACATGGTCCCAAACTACAAAGGCCTTACACCCTTCAAACTCGCTGCAAGGGATGGCAACGTTGTGGTCTTCCAGCACTTGGTCAACCGCAGAAAGGTTGTTCAGTGGAGTCTGGGACCAGTATCCTCCTACCTTTATGACCTGACAGAGATAGACTCCAGGGTCGATGAACACTCAGTGCTTGAGATTATTGCCACCAGTCACAAAAAAGAGGCCAGAAGAATTCTTGAGTTGACTCCAGTCCGACAGCTCATCACGCTCAAGTGGAATCTGTATGGAAAACATTACTTCAGGTCACTGATGGTGATCTACCTGGTGTACATTAGCATATTCACTGTGTGTTGTATAAACCGCCCCCTGAAGGGCATTCCAGAGAATTACACCAAAGCAGGCAACGACCacaccataaaaataaaaaaaaccttcaagGAAAGCTATCAGTCATATACAGATCAACTGCGTCTAATTGCAGAGATAATCAGTCTCATTGGAGCCATCATTATACTGCTGATAGAGATTCCCGGTATTTTGGCAGTGGGGGTTAAACGCTTTTTTGGCCAGACTGCTCTTGGTGGCCTCTTCCATGTCACTTTgATCAGCTACGCTTTGCTGGTTTTGCTTTTGTGTGGGCTGCGAGTCACTGGAATACAAGGAGAATTAATTCCGATGGCTTTTTCTCTGATTCTTGGCTGGTTCAGTCTTGTGTACTTTGCCCGGGGTTTCGAGATGCTGGGACCCTacgtcattgtgatacagaagTCAATATTTGGAGATATAACAAAGTTCATGTGGTTGTCCATCATCTTCCTCATTGGATCTTCTGCTGCCTTGTGGATTTTCTACATGACTCAGGAACCCTTAGCACTTCCGCAGTACCGCTCCTTTCCCATCACCCTCTTCTCTCAGTTTGAGGTGAGCGTCGGTCAGATTGATTTGCCAGTGGACCACACACTCTTTACCCATCCAGTGGTGTATTGGACCCACGTCTGCTTCAGCTTGATCTCTAACGTCCTCCTGTTTAATCTCCTGGTCGCCATGATGAGTGACACTCAGTGGAGAGTAACTCAAGAACGTGACGAGCTCTGGAGGACGCAGGTGGTGGCCACTACTCTGATGCTTGAACGAAAGTTGCCACAGTGCCTGTGGCCAAGATTGGGTGTCTGTGGTCTGATGTTTGGGCTTGGAGAGCGCTGGTATCTTCGAGTGGAGGATCGCAATGACATAATGGCCCAGAAGTTGAAACGTTACGTCGATGCATTCTCAAAAGATGTAGAAGCACCCAAAGAGGAGAAACCTTCTAAGAGTGATGGAGAGCAAAGCATTGCTGAGAGCAACAAAGAAAAATCGAAGAAATCAAAACAGTATTGGAGTCTCATTCGCAGGAGTATAGAGTGTGAAAAGGAAGAATGTGTGGATTGCCCAAATTTCAAGTTTCTCTAAAAAGCGGTCAGGATTCAGTAACATTTAAGAGTTTTGAGACTCCTAGTATTAAAAGGGTTTCTGTTAAGTTATTCTGAATTATCttagtgttgtatattatgcaAATATATAGGTGTGCACCATCACTGGTAAATATAAAGGTGGaagtttaattaagaaatacaaacaaaaacatatcaAACAGAATGTACGTGCAATTCATTAGTGTGAACATTAGACACATTTAGTGCAAATAACAAGCTTTGTGTAAATGATGAGTGTGGTTAGAAATGAGTGCAACAGTAATGCAAATAAAGCACATAAATATCTAAAAA
>TCONS_00020610
GTGTCCTCCTGAAATCATGCCACCCGCCATATCTGGTGAAATAAACCACTGGTGGAGACAAATGCGGTTCCGCCTTCAGCATAAAAAGGGATGGAATGAAATGTTGGATGAGACCTTCCTAATGCAGACCAAAAGAGTAAACGACATCCCACTGTTTTCCGCCACTAAGGAGAATAATGCAGCCTGCATAAAGAAACTGCTTGACTGTTCATCTACTGATATCTTTGAGAGAGGTGAGCTTGGAGAGACAGCTCTGCATGTTGCTGTGATGAATGATAACTTTGAAGCAGCGGTGGCTTTAATGAATGGAGCCCCGGAGCTCATCAACGAGCCCATGACATCTGAACTCTACCATGGTTTAACAGCCCTTCACATCGCTGTGATTAATCAGAATCCTAACTTAATCTGGGAGATGATAAAAAGAGGAGCTGATGTGACGACACCCAGAGTCACAGGCATGTACTTCCGCAAAAGAAGAGAAGGCCTGTTTTACTATGGTGAACACATCCTGGCATTTGCAGCCTGTGTGGGTAATAAAGACATTATGTCCATGCTGATAAAAGCTGGGGCTAATATTCGGGCTCAAGATTCCCGGGgcaacacCATCCTGCACCTGTTGGTTTTGCAGCCCAATAAAACAACTGCATGTCAGATATTTGACTTCTTGCTGGCTCAGGATGCAGAACAGGACTCTGCTCTTCCTCTAGACATGGTCCCAAACTACAAAGGCCTTACACCCTTCAAACTCGCTGCAAGGGATGGCAACGTTGTGGTCTTCCAGCACTTGGTCAACCGCAGAAAGGTTGTTCAGTGGAGTCTGGGACCAGTATCCTCCTACCTTTATGACCTGACAGAGATAGACTCCAGGGTCGATGAACACTCAGTGCTTGAGATTATTGCCACCAGTCACAAAAAAGAGGCCAGAAGAATTCTTGAGTTGACTCCAGTCCGACAGCTCATCACGCTCAAGTGGAATCTGTATGGAAAACATTACTTCAGGTCACTGATGGTGATCTACCTGGTGTACATTAGCATATTCACTGTGTGTTGTATAAACCGCCCCCTGAAGGGCATTCCAGAGAATTACACCAAAGCAGGCAACGACCacaccataaaaataaaaaaaaccttcaagGAAAGCTATCAGTCATATACAGATCAACTGCGTCTAATTGCAGAGATAATCAGTCTCATTGGAGCCATCATTATACTGCTGATAGAGATTCCCGGTATTTTGGCAGTGGGGGTTAAACGCTTTTTTGGCCAGACTGCTCTTGGTGGCCTCTTCCATGTCACTTTgATCAGCTACGCTTTGCTGGTTTTGCTTTTGTGTGGGCTGCGAGTCACTGGAATACAAGGAGAATTAATTCCGATGGCTTTTTCTCTGATTCTTGGCTGGTTCAGTCTTGTGTACTTTGCCCGGGGTTTCGAGATGCTGGGACCCTacgtcattgtgatacagaagTCAATATTTGGAGATATAACAAAGTTCATGTGGTTGTCCATCATCTTCCTCATTGGATCTTCTGCTGCCTTGTGGATTTTCTACATGACTCAGGAACCCTTAGCACTTCCGCAGTACCGCTCCTTTCCCATCACCCTCTTCTCTCAGTTTGAGGTGAGCGTCGGTCAGATTGATTTGCCAGTGGACCACACACTCTTTACCCATCCAGTGGTGTATTGGACCCACGTCTGCTTCAGCTTGATCTCTAACGTCCTCCTGTTTAATCTCCTGGTCGCCATGATGAGTGACACTCAGTGGAGAGTAACTCAAGAACGTGACGAGCTCTGGAGGACGCAGGTGGTGGCCACTACTCTGATGCTTGAACGAAAGTTGCCACAGTGCCTGTGGCCAAGATTGGGTGTCTGTGGTCTGATGTTTGGGCTTGGAGAGCGCTGGTATCTTCGAGTGGAGGATCGCAATGACATAATGGCCCAGAAGTTGAAACGTTACGTCGATGCATTCTCAAAAGATGTAGAAGCACCCAAAGAGGAGAAACCTTCTAAGAGTGATGGAGAGCAAAGCATTGCTGAGAGCAACAAAGAAAAATCGAAGAAATCAAAACAGTATTGGAGTCTCATTCGCAGGAGTATAGAGTGTGAAAAGGAAGAATGTGTGGATTGCCCAAATTTCAAGTTTCTCTAAAAAGCGGTCAGGATTCAGTAACATTTAAGAGTTTTGAGACTCCTAGTATTAAAAGGGTTTCTGTTAAGTTATTCTGAATTATCttagtgttgtatattatgcaAATATATAGGTGTGCACCATCACTGGTAAATATAAAGGTGGaagtttaattaagaaatacaaacaaaaacatatcaAACAGAATGTACGTGCAATTCATTAGTGTGAACATTAGACACATTTAGTGCAAATAACAAGCTTTGTGTAAATGATGAGTGTGGTTAGAAATGAGTGCAACAGTAATGCAAATAAAGCACATAAATATCT
>TCONS_00020611
GTTGTCCtccaacagacaaacaaacatgcTATTCATCAGTTACTAAAATTACATTGGGACTACGTATTTAGGATTTTTGCAAGTCTTGTTGGTCTCGGTGTCCTCCTGAAATCATGCCACCCGCCATATCTGGTGAAATAAACCACTGGTGGAGACAAATGCGGTTCCGCCTTCAGCATAAAAAGGGATGGAATGAAATGTTGGATGAGACCTTCCTAATGCAGACCAAAAGAGTAAACGACATCCCACTGTTTTCCGCCACTAAGGAGAATAATGCAGCCTGCATAAAGAAACTGCTTGACTGTTCATCTACTGATATCTTTGAGAGAGGTGAGCTTGGAGAGACAGCTCTGCATGTTGCTGTGATGAATGATAACTTTGAAGCAGCGGTGGCTTTAATGAATGGAGCCCCGGAGCTCATCAACGAGCCCATGACATCTGAACTCTACCATGGTTTAACAGCCCTTCACATCGCTGTGATTAATCAGAATCCTAACTTAATCTGGGAGATGATAAAAAGAGGAGCTGATGTGACGACACCCAGAGTCACAGGCATGTACTTCCGCAAAAGAAGAGAAGGCCTGTTTTACTATGGTGAACACATCCTGGCATTTGCAGCCTGTGTGGGTAATAAAGACATTATGTCCATGCTGATAAAAGCTGGGGCTAATATTCGGGCTCAAGATTCCCGGGgcaacacCATCCTGCACCTGTTGGTTTTGCAGCCCAATAAAACAACTGCATGTCAGATATTTGACTTCTTGCTGGCTCAGGATGCAGAACAGGACTCTGCTCTTCCTCTAGACATGGTCCCAAACTACAAAGGCCTTACACCCTTCAAACTCGCTGCAAGGGATGGCAACGTCTTCCAGCACTTGGTCAACCGCAGAAAGGTTGTTCAGTGGAGTCTGGGACCAGTATCCTCCTACCTTTATGACCTGACAGAGATAGACTCCAGGGTCGATGAACACTCAGTGCTTGAGATTATTGCCACCAGTCACAAAAAAGAGGCCAGAAGAATTCTTGAGTTGACTCCAGTCCGACAGCTCATCACGCTCAAGTGGAATCTGTATGGAAAACATTACTTCAGGTCACTGATGGTGATCTACCTGGTGTACATTAGCATATTCACTGTGTGTTGTATAAACCGCCCCCTGAAGGGCATTCCAGAGAATTACACCAAAGCAGGCAACGACCacaccataaaaataaaaaaaaccttcaagGAAAGCTATCAGTCATATACAGATCAACTGCGTCTAATTGCAGAGATAATCAGTCTCATTGGAGCCATCATTATACTGCTGATAGAGATTCCCGGTATTTTGGCAGTGGGGGTTAAACGCTTTTTTGGCCAGACTGCTCTTGGTGGCCTCTTCCATGTCACTTTgATCAGCTACGCTTTGCTGGTTTTGCTTTTGTGTGGGCTGCGAGTCACTGGAATACAAGGAGAATTAATTCCGATGGCTTTTTCTCTGATTCTTGGCTGGTTCAGTCTTGTGTACTTTGCCCGGGGTTTCGAGATGCTGGGACCCTacgtcattgtgatacagaagTCAATATTTGGAGATATAACAAAGTTCATGTGGTTGTCCATCATCTTCCTCATTGGATCTTCTGCTGCCTTGTGGATTTTCTACATGACTCAGGAACCCTTAGCACTTCCGCAGTACCGCTCCTTTCCCATCACCCTCTTCTCTCAGTTTGAGGTGAGCGTCGGTCAGATTGATTTGCCAGTGGACCACACACTCTTTACCCATCCAGTGGTGTATTGGACCCACGTCTGCTTCAGCTTGATCTCTAACGTCCTCCTGTTTAATCTCCTGGTCGCCATGATGAGTGACACTCAGTGGAGAGTAACTCAAGAACGTGACGAGCTCTGGAGGACGCAGGTGGTGGCCACTACTCTGATGCTTGAACGAAAGTTGCCACAGTGCCTGTGGCCAAGATTGGGTGTCTGTGGTCTGATGTTTGGGCTTGGAGAGCGCTGGTATCTTCGAGTGGAGGATCGCAATGACATAATGGCCCAGAAGTTGAAACGTTACGTCGATGCATTCTCAAAAGATGTAGAAGCACCCAAAGAGGAGAAACCTTCTAAGAGTGATGGAGAGCAAAGCATTGCTGAGAGCAACAAAGAAAAATCGAAGAAATCAAAACAGTATTGGAGTCTCATTCGCAGGAGTATAGAGTGTGAAAAGGAAGAATGTGTGGATTGCCCAAATTTCAAGTTTCTCTAAAAAGCGGTCAGGATTCAGTAACATTTAAGAGTTTTGAGACTCCTAGTATTAAAAGGGTTTCTGTTAAGTTATTCTGAATTATCttagtgttgtatattatgcaAATATATAGGTGTGCACCATCACTGGTAAATATAAAGGTGGaagtttaattaagaaatacaaacaaaaacatatcaAACAGAATGTACGTGCAATTCATTAGTGTGAACATTAGACACATTTAGTGCAAATAACAAGCTTTGTGTAAATGATGAGTGTGGTTAGAAATGAGTGCAACAGTAATGCAAATAAAGCACATAAATATCT

Function

symbol description
trpv6 Enables calcium channel activity. Involved in negative regulation of G0 to G1 transition. Acts upstream of or within several processes, including calcium ion import; hypotonic salinity response; and response to calcium ion. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including ball; digestive system; gill; integument; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in hyperparathyroidism. Orthologous to several human genes including TRPV6 (transient receptor potential cation channel subfamily V member 6).

GO:

id name namespace
GO:0070509 calcium ion import biological_process
GO:0042539 hypotonic salinity response biological_process
GO:0055074 calcium ion homeostasis biological_process
GO:0055085 transmembrane transport biological_process
GO:0098703 calcium ion import across plasma membrane biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0051592 response to calcium ion biological_process
GO:0006811 ion transport biological_process
GO:0006816 calcium ion transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function
GO:0005262 calcium channel activity molecular_function

KEGG:

id description
ko04970 Salivary secretion
ko04978 Mineral absorption
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-040624-12 Enables calcium channel activity. Involved in negative regulation of G0 to G1 transition. Acts upstream of or within several processes, including calcium ion import; hypotonic salinity response; and response to calcium ion. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including ball; digestive system; gill; integument; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in hyperparathyroidism. Orthologous to several human genes including TRPV6 (transient receptor potential cation channel subfamily V member 6).

Ensembl:

ensembl_id ENSDARG00000014496

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020609 False 2557 mRNA 0.44 17 12294284 12319822
TCONS_00020610 False 2455 mRNA 0.44 16 12294289 12316979
TCONS_00020611 True 2546 mRNA 0.44 17 12294289 12319822

Neighbor

gene id symbol gene type direction distance location
XLOC_010502 CR388102.7 coding downstream 3239 12266366 ~ 12291045 (-)
XLOC_010501 leng8 coding downstream 28131 12256527 ~ 12266153 (-)
XLOC_010500 CR388102.5 coding downstream 40813 12253415 ~ 12253471 (-)
XLOC_010499 CR388102.4 coding downstream 43961 12250268 ~ 12250323 (-)
XLOC_010498 CR388102.2 coding downstream 46364 12247862 ~ 12247920 (-)
XLOC_010504 ephb6 coding upstream 15452 12335274 ~ 12470034 (-)
XLOC_010505 slc2a3b coding upstream 155039 12474861 ~ 12496632 (-)
XLOC_010506 cox6b2 coding upstream 185107 12504929 ~ 12512593 (-)
XLOC_010507 CU694256.1 coding upstream 204910 12524732 ~ 12532027 (-)
XLOC_010508 NA coding upstream 243408 12563230 ~ 12566004 (-)
XLOC_010626 CR392024.2 misc upstream 8575290 20895112 ~ 20895175 (-)
XLOC_010497 CR388102.3 non-coding downstream 54824 12239407 ~ 12239460 (-)
XLOC_010492 CU467865.1 non-coding downstream 282096 12012074 ~ 12012188 (-)
XLOC_010517 NA non-coding upstream 1120915 13440737 ~ 13480372 (-)
XLOC_010519 BX323458.2 non-coding upstream 1202477 13522299 ~ 13542460 (-)
XLOC_010520 NA non-coding upstream 1225471 13545293 ~ 13551327 (-)

Expression


Co-expression Network