RNA id: TCONS_00020590


Basic Information

Item Value
RNA id TCONS_00020590
length 3267
RNA type mRNA
GC content 0.49
exon number 20
gene id XLOC_010490
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11965371 ~ 11986321 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCGCCCCTGGCCTCGAATGAACACACTGGATCATCAGCAGCAGCTTTTCATTGAGGGGAATCGCAGAAACAAGGGGGCTGTCAGAGACTTCAGGAGCGGGGGCCAAAGAAAACCCAGGCGGGCAAGTGTGCGTAGGAAAGAAGGCAATTCCTGTTGAGGCAGAGATGACGGAGGTTAGCGAGATATTGATGTCGGTTCTGTCCGCGATTCGGGTTCCGAGGCCCGGGGATCGTGTTCACAAAGACGAGTGCGCTTTCTCCTTCTCCAGCCCGGAGAGTGAGGGGGGCTTGTATGTCTGCATGAACAGCTTTCTCGGATTTGGGAGTAAATACGTGGACCGACACCATGCCAAAACTGGTCAGAGAGCTTACCTGCACATCACCCGGACCCGGAAAACACAGAAGGAGGATGATCCCAATTCAGGATCAGGTGATCCTCCTAAAAAGAAGCCCACAAGACTGGCCATTGGTATTGAGGGAGGGTTCGATGTTGAGCAGGAGCAGTATGAAGAAGAGGTCAAGGTGGTTCTTTTCCCAGACCGACAGGAAGTGACACTGGATGATCTCTCCTCCATGCCAGATGTTGTTCGGGAGCGGGTGTCTCTGTCAGTGGCGGAGCTTCAGGCAGCAGACTCAGTGTCACACACTCTGCAGGTGCAGCAGTGGGACGGAGAAGTGCGACAGGAGTCAAAACATGCTGCTGAACTTAAACAACTCGACAATGGCCTCAAAATCCCGCCAAGTGGCTGGAAGTGTGAGGTCTGTGAGCTGCAGGAGAACCTGTGGATGAATCTGACGGACGGGAAAGTTTTGTGTGGCCGGAGATATTTTGATGGCTCTGGGGGGAATAACCATGCCCTCCTGTACTACCAGCAGACTGGATACCCACTAGCTGTTAAACTCGGCACAATAACACCTGACGGAGCAGatgtCTATTCATATGATGAAGATGATATGGTATTAGATTCTAAGCTCCCAGAACACCTTTCCCATTTTGGCATTGATATGATGACTATGGAAAAGACGGAGAGAACCATGACTGAGCTGGAGATCGCAGTTAACCAGCGTGTGGGAGAGTGGGAGGTCATCCAGGAGTCCGGCACCACTCTGAGGCCCCTGTGGGGTCCGGGACTCACCGGCATGAAGAACCTGGGAAACAGCTGCTACCTCAACTCTGTCATGCAAGTGCTCTTCACCATCCCAGACTTCCAGACCAAATACGTTTCCAACATTGACAAGATCTTTGATGAGGCGCCCAGTGACCCTACCCAGGACTTTAAGACTCAAGTAGCAAAGCTGGGCTATGGCCTTTTGTCAGGAGAGTACTCTAAACCAGCCCCAGACCCCGCAGATGAACCTAACACCTCTGCTGAACCCAGGGGTGACCAGGTTGGTATTGCACCTCGCATGTTCAAAGCTCTGGTTGGACGAGGCCACCCTGAGTTCTCCACCAATCGGCAACAGGATGCACAAGAGTTTCTTCTTCACTTCATAAATATGGTGGAGAGGAATTGTCGGTCAGGCATGAATCCTTCAGAAGCTTTCAGATTCTTGGTAGAGGAGAAGATTGTATGCCAACAATCACAAAAAGCCAAGTATACCCAGCGAGTTGACTATATCGTCCAGCTGCCCGTTCCCATGGACCAGGCAACTAATATGGATGAGCTTCAAGAAGCAGAGCGTCGTCGTGAGGAGGCGGAGTCATCTGGAGCTCCTCCCCCTGTTGCACCTCGTGCTCAGATCCCATTTGCTGCCTGTCTGGCTGCTCTCAGTGAACCGGAAACACTCACAGATTTCTGGAGCTCTGCAGTTCAGGCCAAAACCACTGCCACAAAGACCACTCGCTTTGCTTCATTTCCTGATCATCTTGTCATCCAAATCAAGAAATTCACCTTTGGGTTGGATTGGGTTCCTAAAAAACTAGATGTGAGCATTGACGTTCCTGAAACGCTGGATCTGAATGCGCTCCGTGCTATGGGACAGCAGCCAGGGGAGGAGCTTCTGCCCGAAGTGGCCCCGCCCCCGCTCATGACCCCCGATGTGGAGGTTAAAGCTCCAGTGTTGGACGACTCCACAGTGTCTCAGCTGTGTGAGATGGGTTTTCCTCTGGAGGCCTGCAGGAAGGCTGTGTATTACACAGGAAACACTGGCATTGATGCTGCTATGAACTGGGTGATGGGACACATGGATGACCCTGatttCGCTGCACCTTTGGTGTTGCCTGGCTCTAGTTCTGCTCCTGGCACGACACCCACAGAAAGCCTACCTGAAGAACACCTGGCAACCATTGTTTCAATGGGATTCAGTCGAGATCAGGCTACTCGTGCTCTCAGAGCAACGAATAATGTTCTGGAGCGAGCTGTGGACTGGATCTTCTCTCATCTGGATGATCTGGAGTCCATGGATGTGTCTGAAGGAGGACGCTCAGAGGGTGGAAGTGAGGCCAGTCGAGAGCCTCCTCCAGGACCTCGTGTCCGTGATGGAACTGGAAAGTATGAGCTCTTTGCATTCATCAGTCACATGGGATCGAGCACAATGTGTGGTCATTACGTCTGCCACATCAAGAAGGACCAACAGTGGGTCATTTTTAACGATCAGAAAGTTTGTGCCTCTGAGAAACCACCGAAGGACCTGGGATACCTGTACTTTTACAGGAGAGTGGTGGAATAAACTAGAAAATCATCTCTGTCTGtctcatgcacgcacacatacacatacacatgcacacacacagttctgtttCTGGTCTAAAGGTATAGTTGGCTCCTGCTTCTGAAATGATCCGCAGTTTAAGTCAAAGCACTTCTCCATCTGATATATTCACTATTGAGAGACAGCTCACACaggggaaggaaaaaaaaatcaaatgtaggATGTGCGGGTTAGAGTGTTCTTACTCAAAACGCCCATGCTGTGCAGCGccttaccacacacacacacacacaaacacaagacagTAGTCTCCTTCGTGCCTCCCCCTGATTGGATAGTGGCTTTTGTGACATCACCGCTTCTAGAGCTAAGCTCCACCTTCCTTTATGTGTTCCAGAATGTTTCTGCAAATGTTTAATGGCAAGTAAATATCACTAAATCACACTCAAATAACTGCTAAATATTATGTATTggagttttaaatttaaaataataataaatgcaaaaggTATCGTGCGGTTTCACTTTCCTTATGTTTTGTTCTCCTTTTTTGGGGGGAGGAAAGAATCATTTTGTtcattttgctttaaaataaaaaaacgtgtCTCTTTGCTA

Function

GO:

id name namespace
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0016579 protein deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:1904888 cranial skeletal system development biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2584 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Involved in negative regulation of viral genome replication. Acts upstream of or within cranial skeletal system development and dorsal/ventral pattern formation. Located in cytoplasm. Orthologous to human USP5 (ubiquitin specific peptidase 5).

Ensembl:

ensembl_id ENSDART00000148666

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022128 lncRNA downstream 2292 11961685 ~ 11963079 (-) True XLOC_010489
TCONS_00022127 lncRNA downstream 3878 11960630 ~ 11961493 (-) False XLOC_010489
TCONS_00020576 lncRNA downstream 185927 11775141 ~ 11779444 (-) False XLOC_010484
TCONS_00022126 lncRNA downstream 325899 11597384 ~ 11639472 (-) True XLOC_010483
TCONS_00022125 lncRNA downstream 426550 11530885 ~ 11538821 (-) True XLOC_010482
TCONS_00022129 lncRNA upstream 6245 11992566 ~ 12005084 (-) True XLOC_010491
TCONS_00020593 lncRNA upstream 65985 12052306 ~ 12054234 (-) False XLOC_010493
TCONS_00020617 lncRNA upstream 492376 12478697 ~ 12481849 (-) False XLOC_010505
TCONS_00020619 lncRNA upstream 518608 12504929 ~ 12512576 (-) False XLOC_010506
TCONS_00020621 lncRNA upstream 524865 12511186 ~ 12512593 (-) True XLOC_010506
TCONS_00020587 mRNA downstream 1567 11960588 ~ 11963804 (-) False XLOC_010489
TCONS_00020588 mRNA downstream 2412 11961685 ~ 11962959 (-) False XLOC_010489
TCONS_00020586 mRNA downstream 4046 11960417 ~ 11961325 (-) False XLOC_010489
TCONS_00020583 mRNA downstream 19232 11911897 ~ 11946139 (-) False XLOC_010488
TCONS_00020584 mRNA downstream 32448 11911903 ~ 11932923 (-) False XLOC_010488
TCONS_00020592 mRNA upstream 65689 12052010 ~ 12060488 (-) False XLOC_010493
TCONS_00020594 mRNA upstream 65985 12052306 ~ 12060770 (-) False XLOC_010493
TCONS_00020595 mRNA upstream 65989 12052310 ~ 12060782 (-) True XLOC_010493
TCONS_00020596 mRNA upstream 78255 12064576 ~ 12097394 (-) False XLOC_010494
TCONS_00020597 mRNA upstream 78897 12065218 ~ 12095144 (-) False XLOC_010494
TCONS_00020572 other downstream 185899 11760919 ~ 11779472 (-) False XLOC_010484
TCONS_00020567 other downstream 1048967 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020565 other downstream 1128139 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020559 other downstream 1703746 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020535 other downstream 2663177 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020591 other upstream 25753 12012074 ~ 12012188 (-) True XLOC_010492
TCONS_00020603 other upstream 253086 12239407 ~ 12239460 (-) True XLOC_010497
TCONS_00020604 other upstream 261541 12247862 ~ 12247920 (-) True XLOC_010498
TCONS_00020605 other upstream 263947 12250268 ~ 12250323 (-) True XLOC_010499
TCONS_00020606 other upstream 267094 12253415 ~ 12253471 (-) True XLOC_010500

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_05086983_05098757.mRNA True 2231 mRNA 0.50 18 CI01000016 5086813 ~ 5098757 (-)