CI01000070_00644863_00676630 (TRPC1)


Basic Information

Item Value
gene id CI01000070_00644863_00676630
gene name TRPC1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000070
NCBI id null
chromosome length 4890654
location 644646 ~ 676660 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000070_00644863_00676630.mRNA
AGTGCTTTGCCGTACTCTCTCTCCGTTATAATGGCTGCTCTATATCAGGGCACGGACGTGTCCTCACCGGATAAATATCTGGCGTTAAAAGACGTCAGAGAGGTGAAGGAGGAGACCACTCTGGACGAGAAGCTCTTTCTGCTGGCCTGCGAGAAGGGAGACTACTACATGGTAAAGAAACTCCTGGAGGAGAAACGACATGGTGAATTAAACATTAACTGTGTAGATGTGCTTGGGAGAGATGCTGTCACCATTTCAATCGAGAATGAGAATCTAGACATACTGCAGTTGCTCTTGGATCATGGCTGTCAGAAAGTGATTCAGCGCATTCAAAACCCAGAGTATTCCACGACCATGGATGTTGCTCCAGTCATTCTTGCTGCCCACAGGAACAATTATGAGATTTTGACCATGCTGTTAAAGCAAGACATCTCTCTGCCCCGTCCTCACGCTGTAGGGTGCGAGTGCACTCTCTGTAATGCCAAGAACAAGAAGGACAGTCTTCGCCACTCAAGGTTCCGTCTAGATATCTACCGATGCCTCGCCAGCCCATCCTTGATCATGCTAACAGAAGAAGACCCCATTCTGAGAGCATTTGAGCTCAGCACTGATCTGAAAGAGCTGAGCCTGGTGGAAGTGGAGTTTCGTGTTGTTATATATTACAGAAATGATTATGAAGAACTTGCCAAGCAGTGCAAGATGTTTGCCAAGGACCTGCTGGCTCAGGCCCGCAACTCTCGTGAGCTGGAGGTCATCCTGAACCACACGTCCAATGAGGACCACGTGGACAAGAGAGGCCTGCTGGAGGAGCGCATGAACCTCAGTCGCCTCAAACTGGCCATCAAATACAACCAAAAAGAGTTTGTCGCCCAGTCCAATTGTCAGCAGTTCCTGAACACGGTGTGGTTCGGCGAGATGGCGAGCTACCGCCGCAAGCACACATGCTTAAAGATCCTGTATGTTTTGAGTGTTGTTCTGCTGTGGCCGCTGCTGTCCGTCTGCTACCTGCTGGGACCTCGTTCTCGCGTGGGCCAGGTCATCCACACACCTTTCGTCAAGTTCATCATTCACAGTGCATCTTACTTCACCTTCCTACTGCTTCTAAACCTGTATTCACTGGTCTACAACGGGGAGAAGAAGAACTTCATGGGTCCCCCTTTGCAGTTGATAGACTACCTTCTCATTCTCTGGATCATAGGCATGGTGTGGTCAGATGTGAAGCGTCTATGGTATGAGGGATTAGAAGATTTTCTGGAAGAGTCACGGAACCAGCTAAGTTTCGTCATGAACTCACTTTATTTGGCCACCTTTGCTCTAAGAGTGGTGGCTCACAGCAAGTTCAAGAACGTCGAATTAGACAGGAAAAACTGGGATGCGTTCCATCCCATCCTGGTTGCTGAAGGGCTTTTTGCTTTCGCCAATGTTCTGAGCTATCTGCGTCTCTTCTTCATGTACACCACCAGCTCCATCTTGGGGCCTTTACAGATCTCCATGGGCCAGATGTTACAGGAGTTTGGGAAGTTTCTTGGCTTATTCCTGCTCGTGCTCATCTCTTTCACCATTGGCTTGACACAGTTGTATGGAAAAGACCAGAAGGATCCATCCACAGCCAAAAATGAAACCAAGGACTGCGGGGGCATCTTCTGTCAGCAGCAGAGCAACGACACCTTTCACACGTTCATGGGGACATGTTATGCCCTCTTCTGGTACATTTTCTCTCTGGCACACGTGGCTCTGTTTATCACAAGGATCAGCTACACAGAGGAGCTGCGATCATTTGTTGGTGCTCTTATTGTCGGAACCTACAACATTGTTGTAGTCATCGTTCTCACTAAACTCCTGGTGGCTATGCTGCATAAGAGCTTCAGACAGATTGCTAACCATGAAGATAAGGAGTGGAAGTTTGCTCGGGCTAAGCTGTGGCTCAGCTACTTTAATGACAAGTGCACACTGCCTCCACCCTTCAACATCCTCCCCTCACCCAAGACTTTGTGCTACTTGGTGATCAGCCTGAGCAAATGGATCTGTTCTCACACCTCCACAGGCAAGGTCAAGAGACAGAATAGCCTCAAGGAATGGAGGAACCTGAAGCAGAAAAGAGACGAGAACTACCAGAAGATTATGTGCTGTCTAGTGCACCGTTACCTGACCTCCACAAGGCAGAAGATGCAGAGCACGGATCAGGCCACGGTAGAGAACCTCAACGATCTGCGGCAAGACCTATCCAAGTTCCGCAATGAAATGAGGGACCTTTTGGGCTTCCGCACTTCCAAATATGCCATGTTCTACCCCAGAAGCTAAGCCATGACCATTTAGTAAAAGTTACCCAGCATGCTCAGCAATGCTCTTCTTCTTCTCTTTTTCTTTGGAAGATGTAAGGTGACAAAAAAAAGTCCTGGGACTCTACTGGAATTCTCTTAAGCTCTGTTTATTCTACACCAAAGTCTCCAGAACCATAACTTATGTAATATTCTTGCATCCTACTTGTTTTCTAAAAGTGTCATTCTTTTCAAATAAA

Function

symbol description
trpc1 Predicted to enable inositol 1,4,5 trisphosphate binding activity and store-operated calcium channel activity. Acts upstream of or within angiogenesis; filopodium assembly; and vasculogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of cation channel complex. Predicted to be integral component of plasma membrane. Is expressed in bulbus arteriosus; head; integument; and nervous system. Orthologous to human TRPC1 (transient receptor potential cation channel subfamily C member 1).

GO:

id name namespace
GO:0005261 cation channel activity molecular_function

KEGG:

id description
K04964 TRPC1; transient receptor potential cation channel subfamily C member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000070_00644863_00676630.mRNA True 2518 mRNA 0.48 12 644646 676660

Neighbor

gene id symbol gene type direction distance location
CI01000070_00598049_00618099 MASTL coding downstream 26001 597534 ~ 618645 (-)
CI01000070_00540305_00580032 ABI1A, ABI1 coding downstream 64325 540084 ~ 580321 (-)
CI01000070_00528394_00528579 NA coding downstream 114727 527434 ~ 529919 (-)
CI01000070_00473257_00476675 DNAJC13 coding downstream 167971 473257 ~ 476675 (-)
CI01000070_00459578_00466849 DNAJC13 coding downstream 177797 459363 ~ 466849 (-)
CI01000070_00709161_00722781 NA coding upstream 32501 709161 ~ 722781 (-)
CI01000070_00776454_00777822 NA coding upstream 99710 776370 ~ 780064 (-)
CI01000070_00813271_00821452 NA coding upstream 136468 813128 ~ 821452 (-)
CI01000070_01158751_01188563 PLOD2 coding upstream 481708 1158368 ~ 1188563 (-)
CI01000070_01221859_01224836 NA coding upstream 544908 1221568 ~ 1224924 (-)
G276848 NA non-coding downstream 1075 621314 ~ 643571 (-)
G276963 NA non-coding downstream 45479 598640 ~ 599167 (-)
G276857 NA non-coding downstream 48600 594455 ~ 596046 (-)
G276859 NA non-coding downstream 56310 587816 ~ 588336 (-)
G276960 NA non-coding downstream 122526 521913 ~ 522120 (-)
G277027 NA non-coding upstream 125372 802032 ~ 838470 (-)
G277042 NA non-coding upstream 200879 877539 ~ 890515 (-)
G277083 NA non-coding upstream 257777 934437 ~ 955478 (-)
G277125 NA non-coding upstream 398064 1074724 ~ 1095428 (-)
G277148 NA non-coding upstream 449329 1125989 ~ 1126477 (-)
G276979 NA other upstream 45155 824258 ~ 824550 (-)
G279144 NA other upstream 2610307 3286967 ~ 3293215 (-)
CI01000070_03427085_03440777 NA other upstream 2709283 3426277 ~ 3440777 (-)
CI01000070_04646935_04666885 NA other upstream 3979888 4646890 ~ 4667474 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022756 trpc1 coding NC_007135.7 CM002908.2 5840258 ~ 5869622 (+)