XLOC_022756 (trpc1)


Basic Information

Item Value
gene id XLOC_022756
gene name trpc1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 5840258 ~ 5869622 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045261
GATTTGTTTGCAAAAATCATTCTACAAGCTGAAAAATACAGAAAGTTGTGGgcaaattaagacacaaaatcacccctgagtggatgaaaacatcccctaGTACATAAAGGTTAATCTCTTTACTGAAACGTTGAACAAAGTGGTTCTTTcattacaaacaaataaaactccTTTTTGAAACCTGTCTTTGTAAGTAAGTGAGTAAGATACATTTATATAATGCCTTTGTAAGAATTATAACGAGTGTATTGgacatttttgcatgtttttctaAATTAAATGATGATCAAATTAAACGTAATCAATTTGGCAACTAAAATAGTATTTTACACTAAAATGCAGGAAAGCACGGTATGCTGATAAATATACATAAGACGTAATGCAGTTAAGCCTTGCCAGTATCAAGAGCATCTTGCCGACATCTATCTCTTATGTAACTGATGCTCCAGCAGCGAAGCAGCGCGCATGCGCACTTACAGCATCATCAGCACCAGCGCAACAGACCATCTTGATGCTCAAGCTTCATGTCTCTACTATCATTCCGGGCAGAATTTGCACGAAAAGCCTTGATATTAACGTTATTAACGTTAATAAGAGTTTGTTTCACCGTATAAGTCGAGATTCGTATACTAAACAGCAGTCAATCTCGGTATAGTGAGGGCCTCGTCAGAACGCGGAACATCGTTTACATCTGGATTGATCagagctgttgttgttttttttcggTGATTTCGGTGGTTTCATGTGTATAAGGGTGTAAGGCTCTGCTCAGTGGGATGCACATCAGTGCTTTGCCGTATTCTCTCTCCGTTATAATGGCTGCTCTATATCAGGGCACGGACTCGTCCTCTCCGGATAAATATCTGGCGTTAAAAGACGTCAGAGAGGTGAAGGAGGAGACCACTCTGGACGAGAAGCTCTTTCTGCTGGCCTGCGAGAAGGGGGACTACTACATGGTGAAGAAGCTTTTGGAGGAGAAACGACATGGCGAGTTGAACATTAACTGTGTAGATGTGCTCGGGAGAGACGCTGTCACCATTTCAATCGAGAATGAGAATCTAGACATATTGCAGCTGCTCTTGGATCATGGCTGCCAGGCCACAGATGCATTATTAGTGGCTATTGATTCAGAAGTGGTAGGAGCAGTTGACATCCTGCTAAACCATCGGCCCAGGCGTTCTTCCAAGCCTTCTATCGCGaaACTGATACAGAAGATTCAGAACCCAGAGTATTCCACCACCATGGATGTTGCTCCAGTCATTCTTGCTGCCCACAGGAACAATTACGAGATTTTGACCATGCTTTTAAAGCAAGACATCTCTCTGCCACGACCCCACGCTGTAGGGTGTGAGTGTACTCTCTGCAATGCCAAGAACAAGAAGGACAGTCTTCGTCATTCAAGGTTCCGTCTAGATATCTACCGATGTCTCGCCAGCCCGTCCTTGATCATGCTGACAGAAGAAGACCCCATTCTGAGGGCGTTTGAGCTCAGCGCTGATCTGAAAGAGCTGAGCCTGGTGGAAGTGGAGTTTCGGAACGATTATGAAGAACTTGCCAAGCAGTGCAAGATGTTTGCCAAGGACCTGCTGGCTCAGGCCCGCAACTCTCGTGAGCTGGAAGTCATACTAAACCACACATCCAGCGAGGACCACGTAGACAAGAGAGGCCTTCTGGAGGAACGCATGAACCTCAGCCGCCTCAAACTGGCCATCAAATACAACCAAAAGGAGTTTGTCGCCCAATCCAACTGTCAGCAGTTTCTGAATACGGTGTGGTTTGGCGAGATGGCGAGCTACCGCcgcaaacacacctgcttaaagATCGTGTCTGTTTTGAGCGTGGCACTGCTGTGGCCCTTGCTGTCCATCTGTTACCTGCTGGGTCCCCGTTCTCGCGTCGGCCAGGTCATCCACACTCCTTTCATCAAGTTTATCATTCACAGTGCTTCTTACTTCACCTTCCTGCTGCTTCTGAACCTGTACTCGCTCATTTACAACGACAAGAAGAATATGGCTCCTGCGCTGCAATTCATAGACTACCTTCTCATTCTCTGGATCATAGGCATGGTGTGGTCGGATGTGAAGCGTCTCTGGTATGAGGGATTAGAGGATTTCCTGGAAGAGTCACGGAACCAGCTGAGCTTCGTCATGAACTCGCTTTATCTGGCCACTTTTGCCCTAAAAATAGTGGCTCACAACAAGTATAGCAAAATTATCAAACCAGAGGAAAGGAAAGAATGGGACGCCTTCCATCCCACCCTGGTCGCCGAGGGTCTTTTTGCATTCGCCATAGTTCTGAGCTATCTACGCCTCTTCTTCATGTACACCACAAGCTCCATCTTGGGGCCTTTACAGATCTCCATGGGTCAAATGCTACAAGAGTTTGGCAAGTTTCTTGGCTTATTCCTGCTAGTGCTCATCTCTTTCACCATCGGCCTGACACAGCTGTATGGAAAAGATCAAGATCCATCCAAGACCAAAGACGATAACAAGGACTGTGAGGGGATCTACTGTCAGCAGCAGAGCAACGACACCTTTCACACGTTTATGGGGACGTGTTACGCACTCTTCTGGTACATCTTCTCTTTGGCACATGTTAATTTGTTTGTGACGAGGATCAGCTACACGGAGGAGCTGCGGTCGTTTGTTGGTGCTCTTATCGTCGGAACCTACAACATCGTTGTGGTCATCGTTCTTACCAAACTCCTGGTGGCCATGCTGCATAAGAGCTTCAGACAGATCGCTAACCATGAAGATAAGGAGTGGAAATTTGCTCGGGCGAAGCTGTGGCTCAGCTACTTCGATGACAAGTGCACACTGCCTCCACCCTTCAACGTCCTTCCCTCACCCAAGACCGTGTGCTACCTAGTGATCAGCATGAGCAAATGGATCTGTTCCCACACCTCCACAGGCAAGGTCAAGAGGCAGAATAGTCTGAGGGAATGGACGAACCTGAAGCAGAAAAGAGATCAGAATTACCAGAAGATTATGTGCTGTCTAGTGCACCGTTACCTGACCTCTACGAGGCAGAAGATGCAGAGCATGGACCAGGCCACAGTAGAGAATCTCAACGATCTGCGGCAAGACCTCTCCAAGTTTCGCAATGAAATGAGAGACCTTTTGGGCTTTCGCACTTCCAAATATGCCATGTTCTACCCCAGAAGCTAA
>TCONS_00045262
CCAGCGCAACAGACCATCTTGATGCTCAAGCTTCATGTCTCTACTATCATTCCGGGCAGAATTTGCACGAAAAGCCTTGATATTAACGTTATTAACGTTAATAAGAGTTTGTTTCACCGTATAAGTCGAGATTCGTATACTAAACAGCAGTCAATCTCGGTATAGTGAGGGCCTCGTCAGAACGCGGAACATCGTTTACATCTGGATTGATCagagctgttgttgttttttttcggTGATTTCGGTGGTTTCATGTGTATAAGGGTGTAAGGCTCTGCTCAGTGGGATGCACATCAGTGCTTTGCCGTATTCTCTCTCCGTTATAATGGCTGCTCTATATCAGGGCACGGACTCGTCCTCTCCGGATAAATATCTGGCGTTAAAAGACGTCAGAGAGGTGAAGGAGGAGACCACTCTGGACGAGAAGCTCTTTCTGCTGGCCTGCGAGAAGGGGGACTACTACATGGTGAAGAAGCTTTTGGAGGAGAAACGACATGGCGAGTTGAACATTAACTGTGTAGATGTGCTCGGGAGAGACGCTGTCACCATTTCAATCGAGAATGAGAATCTAGACATATTGCAGCTGCTCTTGGATCATGGCTGCCAGGCCACAGATGCATTATTAGTGGCTATTGATTCAGAAGTGGTAGGAGCAGTTGACATCCTGCTAAACCATCGGCCCAGGCGTTCTTCCAAGCCTTCTATCGCGaaACTGATACAGAAGATTCAGAACCCAGAGTATTCCACCACCATGGATGTTGCTCCAGTCATTCTTGCTGCCCACAGGAACAATTACGAGATTTTGACCATGCTTTTAAAGCAAGACATCTCTCTGCCACGACCCCACGCTGTAGGGTGTGAGTGTACTCTCTGCAATGCCAAGAACAAGAAGGACAGTCTTCGTCATTCAAGGTTCCGTCTAGATATCTACCGATGTCTCGCCAGCCCGTCCTTGATCATGCTGACAGAAGAAGACCCCATTCTGAGGGCGTTTGAGCTCAGCGCTGATCTGAAAGAGCTGAGCCTGGTGGAAGTGGAGTTTCGGAACGATTATGAAGAACTTGCCAAGCAGTGCAAGATGTTTGCCAAGGACCTGCTGGCTCAGGCCCGCAACTCTCGTGAGCTGGAAGTCATACTAAACCACACATCCAGCGAGGACCACGTAGACAAGAGAGGCCTTCTGGAGGAACGCATGAACCTCAGCCGCCTCAAACTGGCCATCAAATACAACCAAAAGGAGTTTGTCGCCCAATCCAACTGTCAGCAGTTTCTGAATACGGTGTGGTTTGGCGAGATGGCGAGCTACCGCcgcaaacacacctgcttaaagATCGTGTCTGTTTTGAGCGTGGCACTGCTGTGGCCCTTGCTGTCCATCTGTTACCTGCTGGGTCCCCGTTCTCGCGTCGGCCAGGTCATCCACACTCCTTTCATCAAGTTTATCATTCACAGTGCTTCTTACTTCACCTTCCTGCTGCTTCTGAACCTGTACTCGCTCATTTACAACGACAAGAAGAATATGGCTCCTGCGCTGCAATTCATAGACTACCTTCTCATTCTCTGGATCATAGGCATGGTGTGGTCGGATGTGAAGCGTCTCTGGTATGAGGGATTAGAGGATTTCCTGGAAGAGTCACGGAACCAGCTGAGCTTCGTCATGAACTCGCTTTATCTGGCCACTTTTGCCCTAAAAATAGTGGCTCACAACAAGTATAGCAAAATTATCAAACCAGAGGAAAGGAAAGAATGGGACGCCTTCCATCCCACCCTGGTCGCCGAGGGTCTTTTTGCATTCGCCATAGTTCTGAGCTATCTACGCCTCTTCTTCATGTACACCACAAGCTCCATCTTGGGGCCTTTACAGATCTCCATGGGTCAAATGCTACAAGAGTTTGGCAAGTTTCTTGGCTTATTCCTGCTAGTGCTCATCTCTTTCACCATCGGCCTGACACAGCTGTATGGAAAAGATCAAGATCCATCCAAGACCAAAGACGATAACAAGGACTGTGAGGGGATCTACTGTCAGCAGCAGAGCAACGACACCTTTCACACGTTTATGGGGACGTGTTACGCACTCTTCTGGTACATCTTCTCTTTGGCACATGTTAATTTGTTTGTGACGAGGATCAGCTACACGGAGGAGCTGCGGTCGTTTGTTGGTGCTCTTATCGTCGGAACCTACAACATCGTTGTGGTCATCGTTCTTACCAAACTCCTGGTGGCCATGCTGCATAAGAGCTTCAGACAGATCGCTAACCATGAAGATAAGGAGTGGAAATTTGCTCGGGCGAAGCTGTGGCTCAGCTACTTCGATGACAAGTGCACACTGCCTCCACCCTTCAACGTCCTTCCCTCACCCAAGACCGTGTGCTACCTAGTGATCAGCATGAGCAAATGGATCTGTTCCCACACCTCCACAGGCAAGGTCAAGAGGCAGAATAGTCTGAGGGAATGGACGAACCTGAAGCAGAAAAGAGATCAGAATTACCAGAAGATTATGTGCTGTCTAGTGCACCGTTACCTGACCTCTACGAGGCAGAAGATGCAGAGCATGGACCAGGCCACAGTAGAGAATCTCAACGATCTGCGGCAAGACCTCTCCAAGTTTCGCAATGAAATGAGAGACCTTTTGGGCTTTCGCACTTCCAAATATGCCATGTTCTACCCCAGAAGCTAAGCCATGCCTGTTTATTTAAAGTGACCCAGCATGCTCAGCAATGCTCCACTTCTTTTTCTTGGGAAGATATAAAGTGACAAAAAAGTCCTGGGACTCTACTGGAATTGTATTAAGCTCTGTTTATTCTACACCAAAGCCTCCAGAACCATAACTTATGTAATATTCTTGCATCCTACTTGTTTTCTAAAAGTTTAATTCTTTTCAAATGAATAACATTTATTATACAG

Function

symbol description
trpc1 Predicted to enable inositol 1,4,5 trisphosphate binding activity and store-operated calcium channel activity. Acts upstream of or within angiogenesis; filopodium assembly; and vasculogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of cation channel complex. Predicted to be integral component of plasma membrane. Is expressed in bulbus arteriosus; head; integument; and nervous system. Orthologous to human TRPC1 (transient receptor potential cation channel subfamily C member 1).

GO:

id name namespace
GO:0046847 filopodium assembly biological_process
GO:0051480 regulation of cytosolic calcium ion concentration biological_process
GO:0001525 angiogenesis biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0001570 vasculogenesis biological_process
GO:0006811 ion transport biological_process
GO:0006828 manganese ion transport biological_process
GO:0034703 cation channel complex cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015279 store-operated calcium channel activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005262 calcium channel activity molecular_function
GO:0070679 inositol 1,4,5 trisphosphate binding molecular_function

KEGG:

id description
ko04929 GnRH secretion
ko04972 Pancreatic secretion
ko04724 Glutamatergic synapse
ko04726 Serotonergic synapse
ko04360 Axon guidance
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-070830-1 Predicted to enable inositol 1,4,5 trisphosphate binding activity and store-operated calcium channel activity. Acts upstream of or within angiogenesis; filopodium assembly; and vasculogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of cation channel complex. Predicted to be integral component of plasma membrane. Is expressed in bulbus arteriosus; head; integument; and nervous system. Orthologous to human TRPC1 (transient receptor potential cation channel subfamily C member 1).

Ensembl:

ensembl_id ENSDARG00000061203

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045261 False 3167 mRNA 0.47 13 5840258 5869395
TCONS_00045262 True 2904 mRNA 0.48 13 5840748 5869622

Neighbor

gene id symbol gene type direction distance location
XLOC_022755 si:ch211-157j23.2 coding upstream 1934 5826005 ~ 5838324 (+)
XLOC_022754 si:ch211-157j23.3 coding upstream 15790 5811350 ~ 5824468 (+)
XLOC_022753 si:ch211-157j23.2 coding upstream 30235 5799764 ~ 5810023 (+)
XLOC_022752 si:ch211-157j23.3 coding upstream 41834 5789582 ~ 5798424 (+)
XLOC_022751 plod2 coding upstream 525551 5237709 ~ 5314707 (+)
XLOC_022757 mastl coding downstream 23512 5893134 ~ 5908241 (+)
XLOC_022758 pimr64 coding downstream 43013 5912635 ~ 5918755 (+)
XLOC_022759 abi1a coding downstream 65755 5935377 ~ 6012786 (+)
XLOC_022760 CR385039.1 coding downstream 194049 6063671 ~ 6063785 (+)
XLOC_022761 NA coding downstream 213038 6082660 ~ 6089253 (+)
XLOC_022748 NA non-coding upstream 873009 4960973 ~ 4967249 (+)
XLOC_022747 NA non-coding upstream 1331668 4504746 ~ 4508590 (+)
XLOC_022744 CU462914.1 non-coding upstream 1683859 4154959 ~ 4156399 (+)
XLOC_022743 CT583636.1 non-coding upstream 1780685 4059456 ~ 4059573 (+)
XLOC_022741 NA non-coding upstream 1880835 3958172 ~ 3959423 (+)
XLOC_022764 NA non-coding downstream 519813 6389435 ~ 6399785 (+)
XLOC_022765 BX120013.1 non-coding downstream 535572 6405194 ~ 6405316 (+)
XLOC_022766 CR790361.1 non-coding downstream 712430 6582052 ~ 6582168 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000070_00644863_00676630 TRPC1 coding CI01000070 null 644646 ~ 676660 (-)
bowfin (Amia calva) AMCG00009049 trpc1 coding CM030126.1 CM030126.1 22632717 ~ 22648476 (+)