RNA id: TCONS_00045261


Basic Information

Item Value
RNA id TCONS_00045261
length 3167
RNA type mRNA
GC content 0.47
exon number 13
gene id XLOC_022756
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 5840258 ~ 5869622 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATTTGTTTGCAAAAATCATTCTACAAGCTGAAAAATACAGAAAGTTGTGGgcaaattaagacacaaaatcacccctgagtggatgaaaacatcccctaGTACATAAAGGTTAATCTCTTTACTGAAACGTTGAACAAAGTGGTTCTTTcattacaaacaaataaaactccTTTTTGAAACCTGTCTTTGTAAGTAAGTGAGTAAGATACATTTATATAATGCCTTTGTAAGAATTATAACGAGTGTATTGgacatttttgcatgtttttctaAATTAAATGATGATCAAATTAAACGTAATCAATTTGGCAACTAAAATAGTATTTTACACTAAAATGCAGGAAAGCACGGTATGCTGATAAATATACATAAGACGTAATGCAGTTAAGCCTTGCCAGTATCAAGAGCATCTTGCCGACATCTATCTCTTATGTAACTGATGCTCCAGCAGCGAAGCAGCGCGCATGCGCACTTACAGCATCATCAGCACCAGCGCAACAGACCATCTTGATGCTCAAGCTTCATGTCTCTACTATCATTCCGGGCAGAATTTGCACGAAAAGCCTTGATATTAACGTTATTAACGTTAATAAGAGTTTGTTTCACCGTATAAGTCGAGATTCGTATACTAAACAGCAGTCAATCTCGGTATAGTGAGGGCCTCGTCAGAACGCGGAACATCGTTTACATCTGGATTGATCagagctgttgttgttttttttcggTGATTTCGGTGGTTTCATGTGTATAAGGGTGTAAGGCTCTGCTCAGTGGGATGCACATCAGTGCTTTGCCGTATTCTCTCTCCGTTATAATGGCTGCTCTATATCAGGGCACGGACTCGTCCTCTCCGGATAAATATCTGGCGTTAAAAGACGTCAGAGAGGTGAAGGAGGAGACCACTCTGGACGAGAAGCTCTTTCTGCTGGCCTGCGAGAAGGGGGACTACTACATGGTGAAGAAGCTTTTGGAGGAGAAACGACATGGCGAGTTGAACATTAACTGTGTAGATGTGCTCGGGAGAGACGCTGTCACCATTTCAATCGAGAATGAGAATCTAGACATATTGCAGCTGCTCTTGGATCATGGCTGCCAGGCCACAGATGCATTATTAGTGGCTATTGATTCAGAAGTGGTAGGAGCAGTTGACATCCTGCTAAACCATCGGCCCAGGCGTTCTTCCAAGCCTTCTATCGCGaaACTGATACAGAAGATTCAGAACCCAGAGTATTCCACCACCATGGATGTTGCTCCAGTCATTCTTGCTGCCCACAGGAACAATTACGAGATTTTGACCATGCTTTTAAAGCAAGACATCTCTCTGCCACGACCCCACGCTGTAGGGTGTGAGTGTACTCTCTGCAATGCCAAGAACAAGAAGGACAGTCTTCGTCATTCAAGGTTCCGTCTAGATATCTACCGATGTCTCGCCAGCCCGTCCTTGATCATGCTGACAGAAGAAGACCCCATTCTGAGGGCGTTTGAGCTCAGCGCTGATCTGAAAGAGCTGAGCCTGGTGGAAGTGGAGTTTCGGAACGATTATGAAGAACTTGCCAAGCAGTGCAAGATGTTTGCCAAGGACCTGCTGGCTCAGGCCCGCAACTCTCGTGAGCTGGAAGTCATACTAAACCACACATCCAGCGAGGACCACGTAGACAAGAGAGGCCTTCTGGAGGAACGCATGAACCTCAGCCGCCTCAAACTGGCCATCAAATACAACCAAAAGGAGTTTGTCGCCCAATCCAACTGTCAGCAGTTTCTGAATACGGTGTGGTTTGGCGAGATGGCGAGCTACCGCcgcaaacacacctgcttaaagATCGTGTCTGTTTTGAGCGTGGCACTGCTGTGGCCCTTGCTGTCCATCTGTTACCTGCTGGGTCCCCGTTCTCGCGTCGGCCAGGTCATCCACACTCCTTTCATCAAGTTTATCATTCACAGTGCTTCTTACTTCACCTTCCTGCTGCTTCTGAACCTGTACTCGCTCATTTACAACGACAAGAAGAATATGGCTCCTGCGCTGCAATTCATAGACTACCTTCTCATTCTCTGGATCATAGGCATGGTGTGGTCGGATGTGAAGCGTCTCTGGTATGAGGGATTAGAGGATTTCCTGGAAGAGTCACGGAACCAGCTGAGCTTCGTCATGAACTCGCTTTATCTGGCCACTTTTGCCCTAAAAATAGTGGCTCACAACAAGTATAGCAAAATTATCAAACCAGAGGAAAGGAAAGAATGGGACGCCTTCCATCCCACCCTGGTCGCCGAGGGTCTTTTTGCATTCGCCATAGTTCTGAGCTATCTACGCCTCTTCTTCATGTACACCACAAGCTCCATCTTGGGGCCTTTACAGATCTCCATGGGTCAAATGCTACAAGAGTTTGGCAAGTTTCTTGGCTTATTCCTGCTAGTGCTCATCTCTTTCACCATCGGCCTGACACAGCTGTATGGAAAAGATCAAGATCCATCCAAGACCAAAGACGATAACAAGGACTGTGAGGGGATCTACTGTCAGCAGCAGAGCAACGACACCTTTCACACGTTTATGGGGACGTGTTACGCACTCTTCTGGTACATCTTCTCTTTGGCACATGTTAATTTGTTTGTGACGAGGATCAGCTACACGGAGGAGCTGCGGTCGTTTGTTGGTGCTCTTATCGTCGGAACCTACAACATCGTTGTGGTCATCGTTCTTACCAAACTCCTGGTGGCCATGCTGCATAAGAGCTTCAGACAGATCGCTAACCATGAAGATAAGGAGTGGAAATTTGCTCGGGCGAAGCTGTGGCTCAGCTACTTCGATGACAAGTGCACACTGCCTCCACCCTTCAACGTCCTTCCCTCACCCAAGACCGTGTGCTACCTAGTGATCAGCATGAGCAAATGGATCTGTTCCCACACCTCCACAGGCAAGGTCAAGAGGCAGAATAGTCTGAGGGAATGGACGAACCTGAAGCAGAAAAGAGATCAGAATTACCAGAAGATTATGTGCTGTCTAGTGCACCGTTACCTGACCTCTACGAGGCAGAAGATGCAGAGCATGGACCAGGCCACAGTAGAGAATCTCAACGATCTGCGGCAAGACCTCTCCAAGTTTCGCAATGAAATGAGAGACCTTTTGGGCTTTCGCACTTCCAAATATGCCATGTTCTACCCCAGAAGCTAA

Function

GO:

id name namespace
GO:0046847 filopodium assembly biological_process
GO:0051480 regulation of cytosolic calcium ion concentration biological_process
GO:0001525 angiogenesis biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0001570 vasculogenesis biological_process
GO:0006811 ion transport biological_process
GO:0006828 manganese ion transport biological_process
GO:0034703 cation channel complex cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015279 store-operated calcium channel activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005262 calcium channel activity molecular_function
GO:0070679 inositol 1,4,5 trisphosphate binding molecular_function

KEGG:

id description
ko04929 GnRH secretion
ko04972 Pancreatic secretion
ko04724 Glutamatergic synapse
ko04726 Serotonergic synapse
ko04360 Axon guidance
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-070830-1 Predicted to enable inositol 1,4,5 trisphosphate binding activity and store-operated calcium channel activity. Acts upstream of or within angiogenesis; filopodium assembly; and vasculogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of cation channel complex. Predicted to be integral component of plasma membrane. Is expressed in bulbus arteriosus; head; integument; and nervous system. Orthologous to human TRPC1 (transient receptor potential cation channel subfamily C member 1).

Ensembl:

ensembl_id ENSDART00000087034

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046919 lncRNA upstream 1934 5836756 ~ 5838324 (+) True XLOC_022755
TCONS_00045249 lncRNA upstream 572030 5237709 ~ 5268228 (+) False XLOC_022751
TCONS_00045250 lncRNA upstream 577744 5237712 ~ 5262514 (+) False XLOC_022751
TCONS_00046917 lncRNA upstream 873009 4960973 ~ 4967249 (+) False XLOC_022748
TCONS_00046918 lncRNA upstream 873009 4963444 ~ 4967249 (+) True XLOC_022748
TCONS_00045264 lncRNA downstream 36153 5905548 ~ 5908241 (+) True XLOC_022757
TCONS_00046922 lncRNA downstream 213265 6082660 ~ 6089253 (+) False XLOC_022761
TCONS_00046924 lncRNA downstream 213265 6082660 ~ 6089253 (+) False XLOC_022761
TCONS_00046926 lncRNA downstream 213265 6082660 ~ 6089253 (+) False XLOC_022761
TCONS_00046928 lncRNA downstream 213265 6082660 ~ 6089253 (+) False XLOC_022761
TCONS_00045260 mRNA upstream 1935 5829265 ~ 5838323 (+) False XLOC_022755
TCONS_00045259 mRNA upstream 3567 5826005 ~ 5836691 (+) False XLOC_022755
TCONS_00045257 mRNA upstream 15790 5811350 ~ 5824468 (+) False XLOC_022754
TCONS_00045258 mRNA upstream 21693 5811808 ~ 5818565 (+) True XLOC_022754
TCONS_00045255 mRNA upstream 30235 5799764 ~ 5810023 (+) False XLOC_022753
TCONS_00045263 mRNA downstream 23739 5893134 ~ 5907947 (+) False XLOC_022757
TCONS_00045265 mRNA downstream 43240 5912635 ~ 5918755 (+) False XLOC_022758
TCONS_00045266 mRNA downstream 43503 5912898 ~ 5914698 (+) True XLOC_022758
TCONS_00045268 mRNA downstream 65982 5935377 ~ 6012539 (+) False XLOC_022759
TCONS_00045267 mRNA downstream 65982 5935377 ~ 6012539 (+) False XLOC_022759
TCONS_00045239 other upstream 1683859 4154959 ~ 4156399 (+) True XLOC_022744
TCONS_00045238 other upstream 1780685 4059456 ~ 4059573 (+) True XLOC_022743
TCONS_00045212 other upstream 4037874 1802268 ~ 1802384 (+) True XLOC_022724
TCONS_00045190 other upstream 5587332 252805 ~ 252926 (+) True XLOC_022698
TCONS_00045189 other upstream 5601895 238247 ~ 238363 (+) True XLOC_022706
TCONS_00045270 other downstream 194276 6063671 ~ 6063785 (+) True XLOC_022760
TCONS_00045273 other downstream 535799 6405194 ~ 6405316 (+) True XLOC_022765
TCONS_00045274 other downstream 712657 6582052 ~ 6582168 (+) True XLOC_022766
TCONS_00045322 other downstream 3876897 9746292 ~ 9866290 (+) True XLOC_022791
TCONS_00045329 other downstream 4367894 10237289 ~ 10270299 (+) True XLOC_022794

Expression Profile

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