RNA id: TCONS_00046924


Basic Information

Item Value
RNA id TCONS_00046924
length 2086
lncRNA type inter_gene
GC content 0.43
exon number 7
gene id XLOC_022761
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 6082660 ~ 6089253 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGATAATTAGACTGTACCTGCTACTCGGTGGTCATTTTTGTGATTGTTCAACAAGCTAAACACCTCAAATCGTCCCAAACTGTCTGCTGTGCACGCAGGGGAGGCAGAAGTAAAACCGCGACAAAGACAAAGGCTGAGAATGTTCTGACAAAATTACCCTGACCCTGGTGGAGCACGGAGGAGAAGGAGGGGGCAGCAAACAAGGCAGCTTACCTTTAGAGTTGGTCTCCTGCTCCTCCCTAATTTAGGAGTTTTTCatccccaaaaagctgagtctttaaaaaaaattaaagttcctGTGTCTCTGTCGCCTGAGGAGTTCCTTGATGTTCTTCAATCAGCCTTTCTTCAACTGGGCAGTACTGAATTTGATCTGGCCAGGGTTGATTGCCATTAAAACATCAGTAAAATTAATGTTTCTTCTCTCTCACCCTGCGTTCTGAAAGCCAGCCGGGAGCTAAATCTCTCAGCGTTATATTTACTACCAAAGGAACATTTGGAGGAGCAGGCAGAAGAACATAATGCAAGGAAATGAAGAAAATgatgaAGATCATCTCTGTTGGATGTTTGGATGAAGATAATATGCAAAACCAGTTTCTAGAATTTATTGTATATTTCAAACAAAATGAGAGGGATGATTTGCATGAGTGGCGAGCCCTTCGTTCAAGACAAGATGAGGATTACCTTTTAAGTCTGTGAACAGACCAAGAAAGGGTAAGCACTTCTGGGATGCAGCAGGCAATTCAATATGACCAGGAGGATGCGGATGCTGACATGACTGCAACCTGGATGAGGGTGGTCTGAGCATCAGAAACCGAAGCCATTGGGGAAGCATAGGGGTGTTCAGCATCAGGGGTTTGTGCTCCCTCAGATAGGTTGAGTGGGAGCGTGTAGAATGTGGAGCATCCTCCTGATTGTCCTCCATAGGCTGGTCTGGCTCTTCCAAACCATCCTCAGATTCCTCTTTCCTCCAAGGTTGGTAGTGAGGGCCAGTGCCAGGCATATCCGTTGAATTAAGAGGTTGCTGGGTTTCTGCTGTAGAGCGTGGCTGCTGATATTGCAGGATGAAATCATCATAACGTGCCGGGAGCTGAATCTGGCGGTGTGGGCGCTCATGCTGAGACAATGAGGGCAGGGAGTGACATATCCACTGATCATCAATGCTCCGGCTCTAAGGACCATGAACAGGAGTTAGGAGGGAAAGTTTTAGGTAGCTTGCTTGAAGCCAGTGGTGCTGTTAAAGGTAAACAGAGGTCCAGTCTAGTCACTCCATTTAGTTGCGTTTATTAGCCATCAACAAGGATTTGTGCTCAGgaggaaaggtgtgtatgtgtgtttgtgtgtggttttcTGCAAGGAAATAACAGAAATACAATGTCAGTAATCAGTAAGGAAATAACAGAAATACAATGCTTCAGCCTACTAACAAACAAAGTACATACCTAAACACAAACATGGCAAACATTAAACATGAGCACTTAAGTCAGCTTAAATCATACAAAAGCCACTTACTTTGTCAAATACGcacacacagaaaaacaacaaaGGAAATCATGTTCAGTCCTCTGCACAGTTCAGCCATGTGCTGCCAGAAAGAGCAAACTGTGGGCACAGGTGCAGTTAAGGCATTTGCGGCAGTCCTGATTGGTCAGAGATTGAGTGGGTGGATATTGGAGTGAACCATGTACTGAACAGGGGTGACATTACTTTGAGTTTGGAGTTTAAGAATACAAGCTTCTTAACACTCGTAGTGATTttaacatttctttaattttgcAGTAAAGTGACTAAAAACTATTTAATCTAGCAAACAAGGTTACTGTCAAATCAATTCAAATGAGCTAACGTATAGGACAGACTTTTGTGAACATATGACATTCTGAAAAGGTAAAGCCTATATTAGGGCTGGGGGatttggcaaaataaaaaataaaaaaatctagttttttttaataaagtttgacagattcacgatttcgattttttgtttattgtgtaactagtcaacttaaaacattacaacaacatgttctagacgtgcacgcgcttattccgtcaATTTTCCTTCtacattcacacagcgc

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0003008 system process biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045264 lncRNA upstream 174419 5905548 ~ 5908241 (+) True XLOC_022757
TCONS_00046919 lncRNA upstream 244336 5836756 ~ 5838324 (+) True XLOC_022755
TCONS_00045249 lncRNA upstream 814432 5237709 ~ 5268228 (+) False XLOC_022751
TCONS_00045250 lncRNA upstream 820146 5237712 ~ 5262514 (+) False XLOC_022751
TCONS_00046918 lncRNA upstream 1115411 4963444 ~ 4967249 (+) True XLOC_022748
TCONS_00046932 lncRNA downstream 300182 6389435 ~ 6399785 (+) True XLOC_022764
TCONS_00046791 lncRNA downstream 1464046 7553299 ~ 7557890 (+) False XLOC_022770
TCONS_00046793 lncRNA downstream 1465376 7554629 ~ 7557890 (+) False XLOC_022770
TCONS_00046792 lncRNA downstream 1465376 7554629 ~ 7557890 (+) True XLOC_022770
TCONS_00046933 lncRNA downstream 2153771 8243024 ~ 8245079 (+) True XLOC_022777
TCONS_00045269 mRNA upstream 69874 5935469 ~ 6012786 (+) True XLOC_022759
TCONS_00045268 mRNA upstream 70121 5935377 ~ 6012539 (+) False XLOC_022759
TCONS_00045267 mRNA upstream 70121 5935377 ~ 6012539 (+) False XLOC_022759
TCONS_00045265 mRNA upstream 163905 5912635 ~ 5918755 (+) False XLOC_022758
TCONS_00045271 mRNA downstream 18648 6107901 ~ 6118349 (+) True XLOC_022762
TCONS_00045272 mRNA downstream 264141 6353394 ~ 6359270 (+) True XLOC_022763
TCONS_00045275 mRNA downstream 1064375 7153628 ~ 7158301 (+) True XLOC_022767
TCONS_00045276 mRNA downstream 1232863 7322116 ~ 7330156 (+) False XLOC_022768
TCONS_00045277 mRNA downstream 1234641 7323894 ~ 7330156 (+) True XLOC_022768
TCONS_00045270 other upstream 18875 6063671 ~ 6063785 (+) True XLOC_022760
TCONS_00045239 other upstream 1926261 4154959 ~ 4156399 (+) True XLOC_022744
TCONS_00045238 other upstream 2023087 4059456 ~ 4059573 (+) True XLOC_022743
TCONS_00045212 other upstream 4280276 1802268 ~ 1802384 (+) True XLOC_022724
TCONS_00045190 other upstream 5829734 252805 ~ 252926 (+) True XLOC_022698
TCONS_00045273 other downstream 315941 6405194 ~ 6405316 (+) True XLOC_022765
TCONS_00045274 other downstream 492799 6582052 ~ 6582168 (+) True XLOC_022766
TCONS_00045322 other downstream 3657039 9746292 ~ 9866290 (+) True XLOC_022791
TCONS_00045329 other downstream 4148036 10237289 ~ 10270299 (+) True XLOC_022794
TCONS_00045332 other downstream 4213844 10303097 ~ 10319018 (+) False XLOC_022795

Expression Profile

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