RNA id: TCONS_00046792


Basic Information

Item Value
RNA id TCONS_00046792
length 777
lncRNA type antisense_over
GC content 0.47
exon number 3
gene id XLOC_022770
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 7553299 ~ 7557890 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTTGGTAGATTCAGTGTTAAATCATAGACTTCACAGTAGCAATTTGAGTTGACAGATCTTCAGCTTGTCTGTAAATCTGTTGAGTAACATGATTTTGTCTTTGTCTCCAGCAGGATGAAGCATTTGTCAATCAGATGCCTCATCAGAACCTGCAGCATGTGGAGGTTGTGGCCAGTAGGGGACAAAATCAGATCCCTGAACCACAACCTGAGCAGCAGCAACAGAATGAACCTGAGAGACCCCAGCAGAGAGACTTAGTAGTGAACCGAAGAGTCCGTGGGGTTCTGCGTGGTCTTCAGTCTGCTCGTCCTCTCAGAAGAATGAGAGAACAGCAGGATGAAGCATTTGTGAATCAGATGCCTCATCAGAACCTGCAGCATGTGGAGGTTGTGGCCAGTAGGGGACAAAATCAGATCCCTGAACCACAACCTGAGCAGCAGCAACAGAATGAACCTGAGAGACCCCAGCAGAGAGACTTAGTAATCAATGGAAGAGTCCGTGGGGTTCTGCGTGGTCTTCAGTCTGCTCGTCCTCTCAGAAGAATGAGAGAACAGCAGGAGGAAATTGTTAATCTCCAGAATCCTCCTCTCCGGCAACCCCGGCCTGGTCCACCGCCTACCTACATTCGCAGGACGGTGGTGGGCAGCATTGGAGATTTTGCACGCCATTGATGAGGAGTCTGAAAGATCAGCCTCAAAGATGAactaataaatcaataaagagATTGTAAACAGAGTTCTGGAACTATATTTATCCTTTTTGTCAATGccgcagc

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0040011 locomotion biological_process
GO:0006518 peptide metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046932 lncRNA upstream 1154844 6389435 ~ 6399785 (+) True XLOC_022764
TCONS_00046921 lncRNA upstream 1465376 6082660 ~ 6089253 (+) False XLOC_022761
TCONS_00046933 lncRNA downstream 685134 8243024 ~ 8245079 (+) True XLOC_022777
TCONS_00046934 lncRNA downstream 709693 8267583 ~ 8273614 (+) False XLOC_022778
TCONS_00046935 lncRNA downstream 709887 8267777 ~ 8273614 (+) False XLOC_022778
TCONS_00046936 lncRNA downstream 709898 8267788 ~ 8273614 (+) False XLOC_022778
TCONS_00046937 lncRNA downstream 709962 8267852 ~ 8295447 (+) True XLOC_022778
TCONS_00045279 mRNA upstream 5019 7336807 ~ 7549610 (+) False XLOC_022769
TCONS_00045282 mRNA upstream 6765 7495947 ~ 7547864 (+) False XLOC_022769
TCONS_00045281 mRNA upstream 6765 7495947 ~ 7547864 (+) False XLOC_022769
TCONS_00045283 mRNA upstream 6765 7536041 ~ 7547864 (+) True XLOC_022769
TCONS_00045280 mRNA upstream 54067 7495945 ~ 7500562 (+) False XLOC_022769
TCONS_00045284 mRNA downstream 73907 7631797 ~ 7668109 (+) False XLOC_022771
TCONS_00045285 mRNA downstream 79374 7637264 ~ 7638570 (+) False XLOC_022771
TCONS_00045286 mRNA downstream 79632 7637522 ~ 7668158 (+) True XLOC_022771
TCONS_00045287 mRNA downstream 150762 7708652 ~ 7714562 (+) True XLOC_022772
TCONS_00045288 mRNA downstream 183631 7741521 ~ 7746478 (+) False XLOC_022773
TCONS_00045274 other upstream 972461 6582052 ~ 6582168 (+) True XLOC_022766
TCONS_00045273 other upstream 1149313 6405194 ~ 6405316 (+) True XLOC_022765
TCONS_00045270 other upstream 1490844 6063671 ~ 6063785 (+) True XLOC_022760
TCONS_00045239 other upstream 3398230 4154959 ~ 4156399 (+) True XLOC_022744
TCONS_00045238 other upstream 3495056 4059456 ~ 4059573 (+) True XLOC_022743
TCONS_00045322 other downstream 2188402 9746292 ~ 9866290 (+) True XLOC_022791
TCONS_00045329 other downstream 2679399 10237289 ~ 10270299 (+) True XLOC_022794
TCONS_00045332 other downstream 2745207 10303097 ~ 10319018 (+) False XLOC_022795
TCONS_00045341 other downstream 3260070 10817960 ~ 10818085 (+) True XLOC_022800
TCONS_00045351 other downstream 4007006 11564896 ~ 11566442 (+) True XLOC_022807

Expression Profile

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