XLOC_022795 (otulina)


Basic Information

Item Value
gene id XLOC_022795
gene name otulina
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 10302955 ~ 10344556 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045330
CAAAAGTATTATGTTAAACGTTTGTGAAGTCACAGGTTAAATAAAATCATGCTCTTCACGGGCAGACCAGCAGGGGCGACATACTGAGCAAATAAGCCCAGAAGCGACCAGAAGAAGAAAAGCGCTTAATATGCACTCTAATGACGTCAGTCACATGACCACGTGGATGTGAATATGGTTTATGGTTCCTGTCACAGGCCGAAACAAGCATCTCTTACTCTTCGGACGCCTTCTTTAGGTTGAGTTCGCTGTCAGTGAAATTAACCATCGCCATTCGTTGACTGGTAACATCATGTCGTGGCTGAAATCAGTGGCTTCTAGCGAGGAAGTGTTCGACGAGGATGTGGATGATATTAGTCTGCAGAACAAAGAATGGAAATACAACATGGAAAAACGCGTAAAGGTTTGAACAGATGACCAGATACCAAGAAGTGCAGTTTACAGTCTGCTCCTGCAGCTGGACTAGTCTTGCCGAAAGATTTTATTCACAGACACTGCTCAAATGTATTTGTACAAGACATGTAGGATCCCGTCTGGagaaataatatttgtatatggCTAACCCTCTGGAAGTGAAAGCGGCTTGCGCTAGATAACTGCACATACTTTGGTTTTAGACCCAGTGAAAGTGGATTTATTAAAAGTTTTCACTGAGTTCTGTGCCAATATGGGGAACTGTTTGGACTGTTGTGGACAAAAAGCCCCATGTGACCATACAGAGGATGAAACTAAAGGTTTACTGCCCAGCTCTGAATCAAAGACTGGAACAGAAGTTTGCACCAGTCCAGATGAGGAGTGCAGCAGGCATGCAGAACTAAAACCCCCACAGCCGAAGGATGAACACATTGTAACTGAGCAGCCAGTCGCCGAGGCTCAAGTTCCCAAAGCACAGAGCTCTTACTCTCAAACCATATCATTGTTGCACACTGAAGCCTCTCTTGCTACTGAAGTTAATCACAATGTTTCGCCTGAAACAGACACTCCAATCTCAGCTGTAGAAACGCCAAAAACAATGACAGAAGAACTCCAAAACATTGCAACTGAAGTCTTAGAAGCACCTCACGAAACTGTCGAAGCACCTGCGGAAACCGTTGCCTTGGTGAAAGTGGAGATAGAGGGTCAGCATGGGTCAGCTGAAGAGGGAAACATCACAGCTGCTCCGCCAGGTGATGCAGCTGCTGCTCCGGCAAGTTCAGACTTAACACTCACACCTGCTGAGGAGACACCTGTTAAACAAGCACCTGTTGAAGAGGTGATCGCGCTTACTCAGGTAAAAGCTGAAAAGAACTTGCCGGAACCAGAGCCTGAAACACATGTTGTGAATGAGAAGGAAGTGGAACAAGCTTTGAACGACGCCACTGAAGATGCTAGTCTCAGTAACACTGGAGATGTTTCACTGATGGAGAAGAGTAGCATTGAACCTGAATTTTGCCTTTTAGGTCAAATTAATGAGGTGGTTGTTATTGAGAAAAGCGTACCTGAAGTGACTGCTGAGGAACCCGTGATTGAACCAACAGTTGAAGTGGAGGAGAAACTTTCAGAGGATGTTCAGTCTGAGAAGGAAGAACAGAAGCAAGAAACATCTGAAGCTTCTCATACTCAGGAACTTTCACAGGAAGTTAAATCCCCAGGTGTAGATGTTTCCAATGGAGGATCTCCTGGCATTGAGAACGGTCTAGTGAAAGACTCTGAGAGTCTGAAGTGCGAGATTGAAAGAAGTGCTGATGTCGTGGTGGTAGAAAAGCTGCCTCAGAAAGAGGATGCAGTCCAGAAACCAAATGAGGAAGTCTTGGAAACCAAGAGTCAACTCTCAGCACAAACTGAAAGCACTATTGAGTTGGACATACCTGAAGTCTCAGACTCATTGACTGATCAAGAGAAGAGTGAGAAGGTTTCAGAGGAGAAGAGTGAAGCTACAGAACCCACTCAGAATGGCCTGGACTCCACTTGTGCCTCTTTACCGTCAAGCCCTATTGAACAAAGCAGACCCACTGAGACTATGAGTGATTCTGTTGCTGTAGAAGACACTGAAGCCAAAGCCGAGGTTACAGAGTCGAGCATGGCAGAATTACTGAAGGAAGTTGTAAAAGATGTTGCAGAGACTGGACCTCAACAaactgaagaagaagaagaaaaggacaAACAGGAAGACGAAACTAGTGTTGCCCGGGAAAATGAAGACATTTCCGACACCCCAAAATCAGAGACCATTTTCAGCACTACCTCAGTGGAGGTTCAGGTCATAAGAAAGCCAGAAGAGAATGTGGAGGAAGTGCAGGAGGCACTAGATGAGAGTGCAGATCTGTATCTGGGAGCTGAGGAGATTGAAATGGGAGCCAGCAATAACAAGCCATCCAAACCACTGCTAGAGCTCACAAttCCTGGTGTCGAGACCAGATGTAGCTTAGCATCAGCTGTGGACATACTGGCCTACAGTGAGCGAGAATGGAAGGGGAGCACAGATAAAAGTGCTCGCATACGAAAGGGCTACAGTGAGATGTCTCATAGCTTCAGTGGTCTGAGGAGAGTCAGAGGCGATAACTACTGTGCCCTGCGTGCTACACTGTACCAGGTGCTGGCAACCAGCACAAACATGCCCACCTGGATGCAGGACGAAAGCTTTCTATTGTTGCCAGAGAGTATTGAAACTCGGGAGCATTTGATtggtggatgggtgtttcccccACAATGCAAGTTGGGAAGTGAGGAGAATTCTGTGGAGAAGCTGAAATATTATTTGGGTCTTCTTAAAACTCAGTGGAGAGCAGCAGTGGCCTGTGAGAGCCCAGAGGAGAAGCAGAGTCTCTGTGAACATGTGTTTCAAGGTGGAGATGAGGAATATGGTCTCCTGGAAGCACTCAAGTTCCTGATGCTGGCCAAAGCCATTGAGCTTCATCGTAAAATGGTGACAGATCAAGAAGTGCCTGTGTTCTGCTGGCTTCTCTTTGCCCGCGACACATCAGAAAACCCACAATCCCTCCTGGCCAATCACCTGAGCCAGATCGGCTTCAGTGGAGGAGTAGAACAGGTAGAGATGTTTCTGCTGGGCTATGCCTTAAACTACACCATTCAAGCCTTCCGTCTGTACATGACCGACACAGAAGAGTTTGTGACGCATTACCCAGATGACCACAAGCACGAGTGGCCATGTGTGTGTATCGTCACGGAGGACGATCGCCATTACAATGTTCCCGTCAGGAGGACTGTTCAACACCAGCACAGAGATGATTCCACAATGACCTAA
>TCONS_00045331
GAAAAGCGCTTAATATGCACTCTAATGACGTCAGTCACATGACCACGTGGATGTGAATATGGTTTATGGTTCCTGTCACAGGCCGAAACAAGCATCTCTTACTCTTCGGACGCCTTCTTTAGGTTGAGTTCGCTGTCAGTGAAATTAACCATCGCCATTCGTTGACTGGTAACATCATGTCGTGGCTGAAATCAGTGGCTTCTAGCGAGGAAGTGTTCGACGAGGATGTGGATGATATTAGTCTGCAGAACAAAGAATGGAAATACAACATGGAAAAACGCGTAAAGGATGGTTTCAGAGAAGGCATTGATGCAGGGAAAGAAGCGTCACTACAGGCTGGTTTCAACATGGGATACAGAGAAGGAGCCACTAAAATGACAGTCATCGGTCAGCTCAAAGGAATCATAAGTGCGCTGCGGTGCTGGTGTCAGGTTCAGCTGCCTGAAAGCCCCGAGTTAGCCTCTGTCACTGATCTCCTCCAGAGATTGGAGACGCATGAGGATGAACTGGTGGAAGCCATGAGGAAAGCCCAGCAGAGGCCTATACCTAGTGTGACTGAGATGGTGGATGACATGGAGGACCTAAATGTTGAGCAAACCAACCAGGGTGGAGAATCTAAATGCTCAAATGATGGGGACTGTTGTCGGAGAGATGGAGCGAATCGTGAATGCTGTGACGTCAGAGCAGAGAGTAAAGATTCCCCAGGAGTTCCCCCTCATGGTTCTTTCTCTAAAAGAGAGAGTCTCAGAGAGCTGCAGAAACGCTGCTTGGACTTGGTAACAGAACTCGGGCTTCCAGAAGAATTAAAACTGCACATTCAGCAGCTCATAGACACTTAAAGTGGATTCAGGATTGCATTTGCTAATAACTGCGGCATAACGTCTGAGTAACATCCTGTGTGGGCAGGAAACAAACAGCATATTCTTGGAAAGAAAATAGCCTGTGCATCAGTTGACTCAAACTGATTAAGTACTTGAGggagtttatttatatattttttacactgtgattgatttttctgcatttttttacataCACTATCATCAACGCTGAGCATTTTGAGACCTTTTGAGGAATTGTGTGATATGATGTGAACAGTTGAATCCTTATTCACTTGTcagggataaaaaaaataaatgcaatgagtTGATAAGAAATCTATGTTTTGCAATAAAACATTTCAACTTTGTATAGTGATTCATTTTAATTCCACCATACATGGGCAAACTGAGCGAATTACCACCCAATAAAGCGATTCGTTTAAGCAA
>TCONS_00045332
GACGTCAGTCACATGACCACGTGGATGTGAATATGGTTTATGGTTCCTGTCACAGGCCGAAACAAGCATCTCTTACTCTTCGGACGCCTTCTTTAGGTTGAGTTCGCTGTCAGTGAAATTAACCATCGCCATTCGTTGACTGGTAACATCATGTCGTGGCTGAAATCAGTGGCTTCTAGCGAGGAAGTGTTCGACGAGGATGTGGATGATATTAGTCTGCAGAACAAAGAATGGAAATACAACATGGAAAAACGCGTAAAGGTTTGAACAGATGACCAGATACCAAGAAGTGCAGTTTACAGTCTGCTCCTGCAGCTGGACTAGTCTTGCCGAAAGATTTTATTCACAGACACTGCTCAAATGTATTTGTACAAGACATGTAGGATCCCGTCTGGagaaataatatttgtatatggCTAACCCTCTGGAAGTGAAAGCGGCTTGCGCTAGATAACTGCACATACTTTGGTTTTAGACCCAGTGAAAGTGGATTTATTAAAAGTTTTCACTGAGTTCTGTGCCAATATGGGGAACTGTTTGGACTGTTGTGGACAAAAAGCCCCATGTGACCATACAGAGGATGAAACTAAAGGTTTACTGCCCAGCTCTGAATCAAAGACTGGAACAGAAGTTTGCACCAGTCCAGATGAGGAGTGCAGCAGGCATGCAGAACTAAAACCCCCACAGCCGAAGGATGAACACATTGTAACTGAGCAGCCAGTCGCCGAGGCTCAAGTTCCCAAAGCACAGAGCTCTTACTCTCAAACCATATCATTGTTGCACACTGAAGCCTCTCTTGCTACTGAAGTTAATCACAATGTTTCGCCTGAAACAGACACTCCAATCTCAGCTGTAGAAACGCCAAAAACAATGACAGAAGAACTCCAAAACATTGCAACTGAAGTCTTAGAAGCACCTCACGAAACTGTCG
>TCONS_00045333
GAATATGGTTTATGGTTCCTGTCACAGGCCGAAACAAGCATCTCTTACTCTTCGGACGCCTTCTTTAGGTTGAGTTCGCTGTCAGTGAAATTAACCATCGCCATTCGTTGACTGGTAACATCATGTCGTGGCTGAAATCAGTGGCTTCTAGCGAGGAAGTGTTCGACGAGGATGTGGATGATATTAGTCTGCAGAACAAAGAATGGAAATACAACATGGAAAAACGCGTAAAGTGCGCTGCGGTGCTGGTGTCAGGTTCAGCTGCCTGAAAGCCCCGAGTTAGCCTCTGTCACTGATCTCCTCCAGAGATTGGAGACGCATGAGGATGAACTGGTGGAAGCCATGAGGAAAGCCCAGCAGAGGCCTATACCTAGTGTGACTGAGATGGTGGATGACATGGAGGACCTAAATGTTGAGCAAACCAACCAGGGTGGAGAATCTAAATGCTCAAATGATGGGGACTGTTGTCGGAGAGATGGAGCGAATCGTGAATGCTGTGACGTCAGAGCAGAGAGTAAAGATTCCCCAGGAGTTC
>TCONS_00045334
TAATACACGTCGATCTTCCTGGACGCAAAAATGGACGATTCTATTGAGAAGTGAAAGGACAAGTCTTCAGATTTAGGTTTGAACAGATGACCAGATACCAAGAAGTGCAGTTTACAGTCTGCTCCTGCAGCTGGACTAGTCTTGCCGAAAGATTTTATTCACAGACACTGCTCAAATGTATTTGTACAAGACATGTAGGATCCCGTCTGGagaaataatatttgtatatggCTAACCCTCTGGAAGTGAAAGCGGCTTGCGCTAGATAACTGCACATACTTTGGTTTTAGACCCAGTGAAAGTGGATTTATTAAAAGTTTTCACTGAGTTCTGTGCCAATATGGGGAACTGTTTGGACTGTTGTGGACAAAAAGCCCCATGTGACCATACAGAGGATGAAACTAAAGGTTTACTGCCCAGCTCTGAATCAAAGACTGGAACAGAAGTTTGCACCAGTCCAGATGAGGAGTGCAGGCATGCAGAACTAAAACCCCCACAGCCGAAGGATGAACACATTGTAACTGAGCAGCCAGTCGCCGAGGCTCAAGTTCCCAAAGCACAGAGCTCTTACTCTCAAACCATATCATTGTTGCACACTGAAGCCTCTCTTGCTACTGAAGTTAATCACAATGTTTCGCCTGAAACAGACACTCCAATCTCAGCTGTAGAAACGCCAAAAACAATGACAGAAGAACTCCAAAACATTGCAACTGAAGTCTTAGAAGCACCTCACGAAACTGTCGAAGCACCTGCGGAAACCGTTGCCTTGGTGAAAGTGGAGATAGAGGGTCAGCATGGGTCAGCTGAAGAGGGAAACATCACAGCTGCTCCGCCAGGTGATGCAGCTGCTGCTCCGGCAAGTTCAGACTTAACACTCACACCTGCTGAGGAGACACCTGTTAAACAAGCACCTGTTGAAGAGGTGATCGCGCTTACTCAGGTAAAAGCTGAAAAGAACTTGCCGGAACCAGAGCCTGAAACACATGTTGTGAATGAGAAGGAAGTGGAACAAGCTTTGAACGACGCCACTGAAGATGCTAGTCTCAGTAACACTGGAGATGTTTCACTGATGGAGAAGAGTAGCATTGAACCTGAATTTTGCCTTTTAGGTCAAATTAATGAGGTGGTTGTTATTGAGAAAAGCGTACCTGAAGTGACTGCTGAGGAACCCGTGATTGAACCAACAGTTGAAGTGGAGGAGAAACTTTCAGAGGATGTTCAGTCTGAGAAGGAAGAACAGAAGCAAGAAACATCTGAAGCTTCTCATACTCAGGAACTTTCACAGGAAGTTAAATCCCCAGGTGTAGATGTTTCCAATGGAGGATCTCCTGGCATTGAGAACGGTCTAGTGAAAGACTCTGAGAGTCTGAAGTGCGAGATTGAAAGAAGTGCTGATGTCGTGGTGGTAGAAAAGCTGCCTCAGAAAGAGGATGCAGTCCAGAAACCAAATGAGGAAGTCTTGGAAACCAAGAGTCAACTCTCAGCACAAACTGAAAGCACTATTGAGTTGGACATACCTGAAGTCTCAGACTCATTGACTGATCAAGAGAAGAGTGAGAAGGTTTCAGAGGAGAAGAGTGAAGCTACAGAACCCACTCAGAATGGCCTGGACTCCACTTGTGCCTCTTTACCGTCAAGCCCTATTGAACAAAGCAGACCCACTGAGACTATGAGTGATTCTGTTGCTGTAGAAGACACTGAAGCCAAAGCCGAGGTTACAGAGTCGAGCATGGCAGAATTACTGAAGGAAGTTGTAAAAGATGTTGCAGAGACTGGACCTCAACAaactgaagaagaagaagaaaaggacaAACAGGAAGACGAAACTAGTGTTGCCCGGGAAAATGAAGACATTTCCGACACCCCAAAATCAGAGACCATTTTCAGCACTACCTCAGTGGAGGTTCAGGTCATAAGAAAGCCAGAAGAGAATGTGGAGGAAGTGCAGGAGGCACTAGATGAGAGTGCAGATCTGTATCTGGGAGCTGAGGAGATTGAAATGGGAGCCAGCAATAACAAGCCATCCAAACCACTGCTAGAGCTCACAAttCCTGGTGTCGAGACCAGATGTAGCTTAGCATCAGCTGTGGACATACTGGCCTACAGTGAGCGAGAATGGAAGGGGAGCACAGATAAAAGTGCTCGCATACGAAAGGGCTACAGTGAGATGTCTCATAGCTTCAGTGGTCTGAGGAGAGTCAGAGGCGATAACTACTGTGCCCTGCGTGCTACACTGTACCAGGTGCTGGCAACCAGCACAAACATGCCCACCTGGATGCAGGACGAAAGCTTTCTATTGTGGAGAGCAGCAGTGGCCTGTGAGAGCCCAGAGGAGAAGCAGAGTCTCTGTGAACATGTGTTTCAAGGTGGAGATGAGGAATATGGTCTCCTGGAAGCACTCAAGTTCCTGATGCTGGCCAAAGCCATTGAGCTTCATCGTAAAATGGTGACAGATCAAGAAGTGCCTGTGTTCTGCTGGCTTCTCTTTGCCCGCGACACATCAGAAAACCCACAATCCCTCCTGGCCAATCACCTGAGCCAGATCGGCTTCAGTGGAGGAGTAGAACAGGTAGAGATGTTTCTGCTGGGCTATGCCTTAAACTACACCATTCAAGCCTTCCGTCTGTACATGACCGACACAGAAGAGTTTGTGACGCATTACCCAGATGACCACAAGCACGAGTGGCCATGTGTGTGTATCGTCACGGAGGACGATCGCCATTACAATGTTCCCGTCAGGAGGACTGTTCAACACCAGCACAGAGATGATTCCACAATGACCTAACGGCAGACACTTCAGAGAGCAAAGCTGATCTACAAAGTGGCATGACGTTTTGTTTTCTGATTTGATCCGTTGCTCATGCAGTGAATGAACACGAAGGGAATTTACAGCAATCTACCAAGATCAAATTGCATGCATAAGTGCTCAGGTTTTTTCCCCCCCAAATGAATCACAGAATGAACATCTGTCTGCCAGGAAACGCTGTGATGATTAACActggttaagaaaaaaaaaaaaccttactgcCTTTCTACTGTAGCTATGATCTTTTTTCCCCCACTGTtggaaatttctttaaa

Function

symbol description
otulina Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in protein linear deubiquitination. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Is expressed in alar plate midbrain region; lens; optic tectum; retina; and solid lens vesicle. Human ortholog(s) of this gene implicated in otulipenia. Orthologous to several human genes including YAE1 (YAE1 maturation factor of ABCE1).

GO:

id name namespace
GO:1990108 protein linear deubiquitination biological_process
GO:0071797 LUBAC complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2157 Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in protein linear deubiquitination. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Is expressed in alar plate midbrain region; lens; optic tectum; retina; and solid lens vesicle. Human ortholog(s) of this gene implicated in otulipenia. Orthologous to several human genes including YAE1 (YAE1 maturation factor of ABCE1).

Ensembl:

ensembl_id ENSDARG00000045422 ENSDARG00000073931 ENSDARG00000095829

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045330 False 3244 mRNA 0.47 11 10302955 10344260
TCONS_00045331 False 1268 mRNA 0.43 3 10303071 10309934
TCONS_00045332 False 931 nonsense_mediated_decay 0.44 3 10303097 10319018
TCONS_00045333 False 535 mRNA 0.49 2 10303125 10309377
TCONS_00045334 True 3081 mRNA 0.46 10 10310577 10344556

Neighbor

gene id symbol gene type direction distance location
XLOC_022794 pou6f2 coding upstream 30743 10039165 ~ 10272212 (+)
XLOC_022793 si:ch211-146l10.8 coding upstream 270171 10027902 ~ 10032784 (+)
XLOC_022792 cdv3 coding upstream 409161 9881219 ~ 9893794 (+)
XLOC_022791 tmem108 coding upstream 429749 9744012 ~ 9873206 (+)
XLOC_022790 topbp1 coding upstream 565725 9693951 ~ 9737230 (+)
XLOC_022796 si:ch211-69l10.4 coding downstream 53309 10397865 ~ 10406797 (+)
XLOC_022797 myca coding downstream 68928 10413484 ~ 10416284 (+)
XLOC_022798 NA coding downstream 72748 10417304 ~ 10509462 (+)
XLOC_022799 CT573344.2 coding downstream 85970 10430526 ~ 10432439 (+)
XLOC_022800 CT573414.1 coding downstream 473404 10817960 ~ 10818085 (+)
XLOC_022785 NA non-coding upstream 1021938 9275244 ~ 9281017 (+)
XLOC_022780 NA non-coding upstream 1461575 8832054 ~ 8841380 (+)
XLOC_022778 NA non-coding upstream 2007508 8267583 ~ 8295447 (+)
XLOC_022777 NA non-coding upstream 2057876 8243024 ~ 8245079 (+)
XLOC_022770 NA non-coding upstream 2745065 7553299 ~ 7557890 (+)
XLOC_022804 NA non-coding downstream 990079 11334635 ~ 11346871 (+)
XLOC_022806 NA non-coding downstream 1194952 11539508 ~ 11539715 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G472110 NA non-coding CI01000327 null 3367962 ~ 3370417 (-)