XLOC_022792 (cdv3)


Basic Information

Item Value
gene id XLOC_022792
gene name cdv3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 9881219 ~ 9893794 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045323
TCAGTCCCAAAAGCTGCTTTCCCATCCGGGTCAGCTCGAAAGCAACACTATCCGGTGCATTGGGCGAGTGTGTGTCACACTTTCAGCTGCTGAGTGTGTCATGCTGCTCTCAGAACACCTTTAACCTGCGGATACACACATGAAACACGCGGATTACCTGGCAGACACTCACCCAAGGGCTCATTTGTTGTCGTTTCAGACGCTGATCTGATCATTTCTAAGCTTTTTTTAGTGTATAGTTGAGGATATTTGGGGAGAAGATGGCGGATGTGGCTCCGGCCGGCGTGGAGAAGAGTCTGGATGACTTCTTCGCCAAACGCgacaagaagaaaaagaaggagAAGGGAAAGGGAAAGGAGCAGGTGAccggagcagcagcagcagcagcaatgcCGGTGAAAAAGATGAAAAAGGAGAAGGAGAAGTCGACGAAGAGTGAGAATCAAGACGCGCAGATGGAGAAGGAGGATGAGGAATGGAAGGAATTTGAGCAGAAGGAAGTGGACTACACCGGACTCAGACTCCAGGCCATGCAAATGAGTGatgagaaggaggaggaagagtaCGAGAAGGAGGAAGTGGGTGAGGATGGCGAGATCATCTTGGTCACCAGTGATAAAATGTCTGGACCCTGGAATAAATCAGGGGGGGCTCCTCCTTCAGCTGCTTCAGCTCCGGTTGAGGAAGTTGAAGTTCCTGAGCCCAAAGCACCTGGTGTATATCGTCCCCCTGGGGCCCGGCTAACCACTACTAAGAAAGCCCCAGCTCAAGGGCCTCCAGAGATCTTCAGTGACGCCCAGTTTCCTTCTCTCCTGTCCACTGCCAGACATGTGGAGACTCGCAAGGACAGAGAGATGGAGAAAACCTTCGAAGTGGTCAAGCACAAGAGCCGGGTCCGAGAAGGCGAAGGTCCAGGCTCCATGCAGCAGTTACAGTTAGATAATCAGTACGCCATCCTGGGGGACAAGTAATAGCCATCTCCCCCGTCCCCCCCAAGCCTACCGCCGACGGTACAGTAAGACTCGCAGGGGGCAAAAAAAATGACCTGCAGCTGCCTGATGCAGTCCTGACTGAGCTGGAGACGTCTGTgcccatacatacacacacacacaaacacaccctgtTAAGCATCTACACATGaacatattttttacacacacacatttagccaTTGTCGTCCACtcatatacaaacacaaacacacacacacacggacacggCGGATAAAGGCCCTCCCTTATCAACTGCATTCAAACAAGCTGCAGCAACAGGAACTGACTGAAATTTCCAAATCTGCTTTATATACAACACCGTTCACCAAGACGAATGACACTGCATCAAACGAACAAGGCACCAAATGTTTATTACGGTGGATTTCCTCATGAGGTTGGTTGGCCGGCAGAGCCACTGGACATCAGCCAATCTTGAGAAAATGAGAAAAGCCACTTTGAGAATGGAGTTCAAGACATTGGGtgagaattagaaaaaaaaaaaaaaaactgctaaagttttttttctttgctacATCAGTATCGTTCCCAAaccattggattttttttattcttgcgtTGTGATGACAGAAAGCTGGGAGTTTTCGGTTTTGGGCACTAGAGAGGGGAGACTACCTCAGTTACATATCTGTGGTTACCATGTCGACCAGGTTCTGGGCTCTGATTGGCTGCAGAAATTAACACCAGTCCAGCCAAAGAGGAGCAACTCAACGTTCAACCTTAAACTTGAATAttcgcctgttttttttttccttcctctACTCCTCTTAATGCAAGATCTGTCGACAGAGGCGATAAAGTCTTCAAAGTTACCTGTTAAAGTGGCCttactgtgggggaaaaaaagataTGAAAGCAATGGGagagaaatatatttatatttagagatgCGTAAAAAAGATATTGTTCTCAAAGGCAATTCCTGGTCGTGTTGCAGGTGAATGCCTGCTTGATGAAATCCTACCACTCTGAGGAGTTCAAAAAACCATCTTCGTATCCCTCTGTGAGAATGTAGTTCTGTGCTAGCTTGTCGACATACTGCGAATAATGGATGATCTCTAACAATGTCCCTTTAACCCTTTCATCTGTTCATCTCTCctcattttatttgattccaTGATGATTGACAAACCATTATTAAAGCTTAAACTTTCTAATCTC

Function

symbol description
cdv3 Predicted to be active in cytoplasm. Is expressed in several structures, including alar plate midbrain region; immature eye; midbrain; myotome; and retina. Orthologous to human CDV3 (CDV3 homolog).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6034 Predicted to be active in cytoplasm. Is expressed in several structures, including alar plate midbrain region; immature eye; midbrain; myotome; and retina. Orthologous to human CDV3 (CDV3 homolog).

Ensembl:

ensembl_id ENSDARG00000023028

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045323 True 2171 mRNA 0.47 5 9881219 9893794

Neighbor

gene id symbol gene type direction distance location
XLOC_022791 tmem108 coding upstream 8013 9744012 ~ 9873206 (+)
XLOC_022790 topbp1 coding upstream 143989 9693951 ~ 9737230 (+)
XLOC_022789 nphp3 coding upstream 197845 9612218 ~ 9683374 (+)
XLOC_022788 GPR17 coding upstream 275899 9604442 ~ 9605320 (+)
XLOC_022787 si:ch211-285f17.1 coding upstream 282763 9372292 ~ 9598456 (+)
XLOC_022793 si:ch211-146l10.8 coding downstream 134108 10027902 ~ 10032784 (+)
XLOC_022794 pou6f2 coding downstream 145371 10039165 ~ 10272212 (+)
XLOC_022795 otulina coding downstream 409161 10302955 ~ 10344556 (+)
XLOC_022796 si:ch211-69l10.4 coding downstream 504071 10397865 ~ 10406797 (+)
XLOC_022797 myca coding downstream 519690 10413484 ~ 10416284 (+)
XLOC_022785 NA non-coding upstream 600202 9275244 ~ 9281017 (+)
XLOC_022780 NA non-coding upstream 1039839 8832054 ~ 8841380 (+)
XLOC_022778 NA non-coding upstream 1585772 8267583 ~ 8295447 (+)
XLOC_022777 NA non-coding upstream 1636140 8243024 ~ 8245079 (+)
XLOC_022770 NA non-coding upstream 2323329 7553299 ~ 7557890 (+)
XLOC_022798 NA non-coding downstream 523510 10417304 ~ 10509462 (+)
XLOC_022799 CT573344.2 non-coding downstream 536732 10430526 ~ 10432439 (+)
XLOC_022800 CT573414.1 non-coding downstream 924166 10817960 ~ 10818085 (+)
XLOC_022804 NA non-coding downstream 1440841 11334635 ~ 11346871 (+)
XLOC_022806 NA non-coding downstream 1645714 11539508 ~ 11539715 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G472038 NA non-coding CI01000327 null 3147471 ~ 3168949 (-)
rainbow trout (Oncorhynchus mykiss) G476487 NA non-coding NC_048570.1 CM023224.2 13963571 ~ 13963774 (-)