XLOC_022797 (myca)


Basic Information

Item Value
gene id XLOC_022797
gene name myca
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 10413484 ~ 10416284 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045336
TCAGACTATCAGTCTGTCCAGCATCTGAGAGCTGCACGAGCGCGCAGggttgtttatattttccatcaCTTTCCTTCCCACTTGACCGTGACTCTGACGCCACTTATGCTGCAAGTGACCGGAGCAAAAACTGTTGGATTTTACTTCTCGCTCCTTCTTTTTTGCTCTCTTTTCATTGCATTGCGTCTCGAAAGAAACAATTCTGGAACGGCATTCGTTAAATACAAGTGTCAAAATGCTGGTGAGTGCGAGTTTGGCGTGTAAAAACTACGATTACGACTACGACTCCATCCAGCCCTACTTCTACTTCGACAACGACGATGAGGATTTTTATCACCATCAGCAAGGACAGACTCAACCTTCAGCCCCCAGCGAGGACATTTGGAAGAAATTCGAACTGCTGCCCACACCGCCCCTCTCGCCCAGCCGGAGACAGTCGCTCTCCACCGCGGAACAGCTGGAGATGGTCAGCGAGTTCCTGGGAGACGACGTGGTCAGCCAGAGCTTCATCTGCGATGATGCGGACTACTCCCAGTCCTTCATCAAGTCCATCATCATCCAGGACTGCATGTGGAGCGGCTTTTCTGCCGCTGCCAAGTTGGAGAAAGTGGTTTCAGAGAGACTGGCGTCTTTGCACGCGGAAAGGAAGGAACTGATGTCTGACAGCAACTCAAATCGACTAAACGCGAGCTATTTGCAGGATCTGAGCACCTCTGCATCAGAATGCATCGATCCCTCTGTGGTCTTCCCATATCCTCTGACAGAGTGTGGGAAAGCCGGCAAGGTTGCATCACCACAGCCCATGCTGGTCCTGGACACTCCACCTAACAGCTCCAGCAGCAGTGGCAGCGATTCAGaagatgaagaagaagaggatgaggaggaggaagaagaagaggaggaggaagaagaggaggaagaggaggaagaaaTTGATGTGGTGACTGTGGAAAAGCGACAGAAAAGGCACGAGACGGATGCTTCAGAGTCGAGGTACCCCAGTCCCCTAGTTTTGAAGCGCTGTCACGTCTCCACCCACCAGCACAACTACGCCGCCCATCCGTCAACGCGGCATGACCAGCCTGCTGTCAAGAGGCTACGACTTGAGGCTAGCAACAATCACAGcatcaacagcagcagcagcagcaacaggcATGTGAAGCAGCGCAAGTGTGCGAGTCCTCGGACATCGGATTCTGAGGACAATGACAAACGCAGGACTCACAATGTGCTGGAGCGACAGCGCAGGAATGAACTCAAACTCAGCTTTTTCGCGCTACGGGATGAGATCCCTGAGGTCGCGAATAACGAGAAAGCTGCTAAAGTGGTTATCCTAAAGAAGGCGACAGAGTGCATCCACAGCATGCAGTTGGACGAGCAGAGGCTGCTGTCCATCAAAGAACAGCTGAGGCGAAAGAGCGAACAGTTAAAACACAGGCTTCAGCAGCTGCGGAGTTCACATTAATGAATCTGTGTCACAAGCGAAAAGACTTTCCAAGAACTCCCACCCCCTGCTTTTTTATGCAAGACTGTTGCTGTGTATAGTTTGAACGTTGCAtgtcaaatgcatttttttttttccttttgaataTTGTCAACTTTTTTCATGTTTGAAACTGCCAGTTTGGTTGGAAACTACAAGTTTGTTCAAGTAATTTGTATTTAagggatttatttttattaataaaataagaaaaatataggGCTGCGCAGCCctagattaaaatgtttttgtaagtTTTTGTATATAACGAATTAATATTTCctaagaaaaatatttttgaacCTGTATTAGCTATGTGTTCTCATAAACCATATTCGTTTTCAATGTTTTCACTCAATCATAAAGGAATTTCTTTCTGAA
>TCONS_00045337
TGTCAAAATGCTGGTGAGTGCGAGTTTGGCGTGTAAAAACTACGATTACGACTACGACTCCATCCAGCCCTACTTCTACTTCGACAACGACGATGAGGATTTTTATCACCATCAGCAAGGACAGACTCAACCTTCAGCCCCCAGCGAGGACATTTGGAAGAAATTCGAACTGCTGCCCACACCGCCCCTCTCGCCCAGCCGGAGACAGTCGCTCTCCACCGCGGAACAGCTGGAGATGGTCAGCGAGTTCCTGGGAGACGACGTGGTCAGCCAGAGCTTCATCTGCGATGATGCGGACTACTCCCAGTCCTTCATCAAGTCCATCATCATCCAGGACTGCATGTGGAGCGGCTTTTCTGCCGCTGCCAAGTTGGAGAAAGTGGTTTCAGAGAGACTGGCGTCTTTGCACGCGGAAAGGAAGGAACTGATGTCTGACAGCAACTCAAATCGACTAAACGCGAGCTATTTGCAGGATCTGAGCACCTCTGCATCAGAATGCATCGATCCCTCTGTGGTCTTCCCATATCCTCTGACAGAGTGTGGGAAAGCCGGCAAGGTTGCATCACCACAGCCCATGCTGGTCCTGGACACTCCACCTAACAGCTCCAGCAGCAGTGGCAGCGATTCAGaagatgaagaagaagaggatgaggaggaggaagaagaagaggaggaggaagaagaggaggaagaggaggaagaaaTTGATGTGGTGACTGTGGAAAAGCGACAGAAAAGGCACGAGACGGATGCTTCAGAGTCGAGGTACCCCAGTCCCCTAGTTTTGAAGCGCTGTCACGTCTCCACCCACCAGCACAACTACGCCGCCCATCCGTCAACGCGGCATGACCAGCCTGCTGTCAAGAGGCTACGACTTGAGGCTAGCAACAATCACAGcatcaacagcagcagcagcagcaacaggcATGTGAAGCAGCGCAAGTGTGCGAGTCCTCGGACATCGGATTCTGAGGACAATGACAAACGCAGGACTCACAATGTGCTGGAGCGACAGCGCAGGAATGAACTCAAACTCAGCTTTTTCGCGCTACGGGATGAGATCCCTGAGGTCGCGAATAACGAGAAAGCTGCTAAAGTGGTTATCCTAAAGAAGGCGACAGAGTGCATCCACAGCATGCAGTTGGACGAGCAGAGGCTGCTGTCCATCAAAGAACAGCTGAGGCGAAAGAGCGAACAGTTAAAACACAGGCTTCAGCAGCTGCGGAGTTCACATTAATGAATCTGTGTCACAAGCGAAAAGACTTTCCAAGAACTCCCACCCCCTGCTTTTTTATGCAAGACTGTTGCTGTGTATAGTTTGAACGTTGCAtgtcaaatgcatttttttttttccttttgaataTTGTCAACTTTTTTCATGTTTGAAACTGCCAGTTTGGTTGGAAACTACAAGTTTGTTCAAGTAATTTGTATTTAagggatttatttttattaataaaataagaaaaatataggGCTGCGCAGCCctagattaaaatgtttttgtaagtTTTTGTATATAACGAATTAATATTTCctaagaaaaatatttttgaacCTGTATTAGCTATGTGTTCTCATAAACCATATTCGTTTTCAATGTTTTCACTCAATCATAAAGGAATTTCTTTCTGAACTTGACTCTCTTGGTCTCATTATACACACAGATTAGACACTATTGAAATGTTTGTAGAGTGTTTATTCAGAAAAAATAGCTAAGTAATGTATAATACTGCATTTTGTTTACAACGAAAAGATGCCTGTCCAAAATGTTATGTGGGATTGCTGCATGAAATACACAGACAATACTTAAAAGCATGATTAAAGAATATAAATACTTGCATCCCTGCATCAAGATGAACTTGACCCCCC

Function

symbol description
myca Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within hematopoietic stem cell differentiation; regulation of vasculature development; and vasculature development. Predicted to be located in nucleus. Is expressed in several structures, including digestive system; immature eye; nervous system; neural tube; and pronephros. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); demyelinating disease; hematologic cancer (multiple); prostate cancer (multiple); and urinary bladder cancer. Orthologous to human MYC (MYC proto-oncogene, bHLH transcription factor).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:1901342 regulation of vasculature development biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0001944 vasculature development biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko01054 Nonribosomal peptide structures
ko01008 Polyketide biosynthesis proteins

ZFIN:

id description
ZDB-GENE-990415-162 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within hematopoietic stem cell differentiation; regulation of vasculature development; and vasculature development. Predicted to be located in nucleus. Is expressed in several structures, including digestive system; immature eye; nervous system; neural tube; and pronephros. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); demyelinating disease; hematologic cancer (multiple); prostate cancer (multiple); and urinary bladder cancer. Orthologous to human MYC (MYC proto-oncogene, bHLH transcription factor).

Ensembl:

ensembl_id ENSDARG00000045695

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045336 False 1864 mRNA 0.47 3 10413484 10416048
TCONS_00045337 True 1872 mRNA 0.46 2 10414028 10416284

Neighbor

gene id symbol gene type direction distance location
XLOC_022796 si:ch211-69l10.4 coding upstream 6687 10397865 ~ 10406797 (+)
XLOC_022795 otulina coding upstream 68928 10302955 ~ 10344556 (+)
XLOC_022794 pou6f2 coding upstream 141272 10039165 ~ 10272212 (+)
XLOC_022793 si:ch211-146l10.8 coding upstream 380700 10027902 ~ 10032784 (+)
XLOC_022792 cdv3 coding upstream 519690 9881219 ~ 9893794 (+)
XLOC_022798 NA coding downstream 1020 10417304 ~ 10509462 (+)
XLOC_022799 CT573344.2 coding downstream 14242 10430526 ~ 10432439 (+)
XLOC_022800 CT573414.1 coding downstream 401676 10817960 ~ 10818085 (+)
XLOC_022801 si:dkey-37o8.1 coding downstream 482387 10898671 ~ 10901351 (+)
XLOC_022802 zfand1 coding downstream 666862 11083146 ~ 11087183 (+)
XLOC_022785 NA non-coding upstream 1132467 9275244 ~ 9281017 (+)
XLOC_022780 NA non-coding upstream 1572104 8832054 ~ 8841380 (+)
XLOC_022778 NA non-coding upstream 2118037 8267583 ~ 8295447 (+)
XLOC_022777 NA non-coding upstream 2168405 8243024 ~ 8245079 (+)
XLOC_022770 NA non-coding upstream 2855594 7553299 ~ 7557890 (+)
XLOC_022804 NA non-coding downstream 918351 11334635 ~ 11346871 (+)
XLOC_022806 NA non-coding downstream 1123224 11539508 ~ 11539715 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000327_03391608_03393235 MYC, MYCB, MYCA coding CI01000327 null 3391608 ~ 3393496 (+)