XLOC_022796 (si:ch211-69l10.4)


Basic Information

Item Value
gene id XLOC_022796
gene name si:ch211-69l10.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 10397865 ~ 10406797 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045335
ATGGCTGAAGCAACGTCGAGGTGTCACTGTAGCGTCCCTTATTGCTCTAGCAATAAGCGTCGTCAACCATATCTGAGTTTTCACGCGTTTCCCAGCTGTAAATATGACAGGAAGAAGTGGGTGCATGTCATTCGACGCGATGAGTCTCTGACTTTTAACATCCTCAGAGGCAGCACATATGTTTGCAGCCGGCACTTCATTGAGGCGGATTACACTGCCGCCACAGGCCGAAAGCGCCTCAGAAAAGGGGCCGTTCCATCCCGATTCCACTGGAATAACTGGGGAGATTCATCACGACTGACGGTGTACGACGGAGGAGTAGATCGACGGGGACTTGACCCTTCTCAAAACGGCGACATCGTTCCTGAAGTACCACCAAAAGCTGGAGCAGACCACGACTATGCAGTCGCTCCTCTTCCAGGTGCACAGGATGCAGCAGCAGCACGTATACAGGAACTTGAAGCTGAAGTCAGAAGACTGGAAACTGAGCTGGGGCAGCTGAAAATAAACCAATCTCTGTCACAGTTTCAGAGATTTTGTGCTTCAGATGAAGACATACGTTTTTACACAAGTTTTCCATCTGAAAAAGTCTTCCTAGCATTCTGGAAAGCAATTGAGCCCTCTGCGTCCATGATGGTCTATTGGTCTCTGGCCCAGAAGAAGGGACATACAGCTGGAATGGAAGCTTCTCAAAGCCATCAGCGAAGCCTGCCACTGATTGATGAGTTTTTCCTATACTGCTGTCATGTTTCTGCAGGTCTTAAAGAGAAAATGTTAGCAGACATTTTCAAGATTAGTCTCTCCACAGTAAGTCGTGTCATCATAACCTGGGCTAATTATCTTTACCTGATCTTTGGATCTTTGCCAGTATGGATGAGCAGAAAGCAAGTGAATTCCACAATGCCTGAGAAGTTTAGGTAGTTCTGTCCAGAGGTGCAGGTCATCATCGACTGCATAGAGATAAGGTGCCAGAATCCATCTTCCCTCACACTCCAGTCTGAGGTGAGTTCCTCGTATAAAAAACACCACCACCATCACATTTGTTTCCAGTTCGTTCACTGGTTCCATTTCAGATTAAGAGTTGACAAAACAGTCAGGCACACTCAAGCTGTTGGAACCAGGGGATGCTTGCATGGCTAACAAAGGATTCACCATTGAGAACATTCTGGTGGAGCGAGGGGCCAAACTCATCATACCATCTTTCCAAACAGCAACTCAGTACAGCAAAGAAGATGCTGAGAGAACGCAAGCCATAGCACGCCTTCAAATTCTTGTTGAGAGAGCCATCAGAAGAGTGAAAGAGCTTCGCATCTGCGACACCCCTGTAACCTTGACCATGTCTGGAACAGTTATCCAGCTGTGGACTAACTGCTGCCTGATGAATAATTTTCAGTGGCCGCTTGATATtaagtcaagtttatttataaacaaattttgagaggatcaagtgcttatgattgtccacagcTGAGTGGATTacaacctttcatcaaagttgttctaaaactattaaacaacatccattcttgtaaaatgttgaatactgtgtgtatgtatgtatgtatgtatgtatgtatgtatatatatatatatatttcatgtaCATACATATACAACTATACAAACTGATATACATATATACGCATAATGCATATACTCGTGTATAAATgtcaacaaatgtatatttttaaatgtattatataaatcttgaaaaaaatacattgaataaatAACATATGTACAACC

Function

symbol description
si:ch211-69l10.4 Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-259 Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000098036

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045335 True 1746 mRNA 0.43 2 10397865 10406797

Neighbor

gene id symbol gene type direction distance location
XLOC_022795 otulina coding upstream 53309 10302955 ~ 10344556 (+)
XLOC_022794 pou6f2 coding upstream 125653 10039165 ~ 10272212 (+)
XLOC_022793 si:ch211-146l10.8 coding upstream 365081 10027902 ~ 10032784 (+)
XLOC_022792 cdv3 coding upstream 504071 9881219 ~ 9893794 (+)
XLOC_022791 tmem108 coding upstream 524659 9744012 ~ 9873206 (+)
XLOC_022797 myca coding downstream 6687 10413484 ~ 10416284 (+)
XLOC_022798 NA coding downstream 10507 10417304 ~ 10509462 (+)
XLOC_022799 CT573344.2 coding downstream 23729 10430526 ~ 10432439 (+)
XLOC_022800 CT573414.1 coding downstream 411163 10817960 ~ 10818085 (+)
XLOC_022801 si:dkey-37o8.1 coding downstream 491874 10898671 ~ 10901351 (+)
XLOC_022785 NA non-coding upstream 1116848 9275244 ~ 9281017 (+)
XLOC_022780 NA non-coding upstream 1556485 8832054 ~ 8841380 (+)
XLOC_022778 NA non-coding upstream 2102418 8267583 ~ 8295447 (+)
XLOC_022777 NA non-coding upstream 2152786 8243024 ~ 8245079 (+)
XLOC_022770 NA non-coding upstream 2839975 7553299 ~ 7557890 (+)
XLOC_022804 NA non-coding downstream 927838 11334635 ~ 11346871 (+)
XLOC_022806 NA non-coding downstream 1132711 11539508 ~ 11539715 (+)

Expression


Co-expression Network