XLOC_022780


Basic Information

Item Value
gene id XLOC_022780
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 8832054 ~ 8841380 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046938
CAGAACAGGACTGGTCCAGTTAGTGAGGCCTGCCTCACCTTTAACCCACCTAGAGGTGACTTAACCCGTTGCAGCCCATCCAGCTACAACCCTGGCTGCAGCATCACCCACTGAAGACACTGCAGTACTCCTAGAGGCCACAGAGTGCAGCTCAGTGCCTGTGCCACCTAGGCTCATAGCCCTCCCGGCCCCAGCCCGGTTCCTTGCCCTGCTGGCCCCAGCCTGCTTCCTTGCCACGCTGGAAGCCAGCTCCCTACCTACAGACCAGCTCTTGCTTACACCACTAGGACACTTACTGCCCTGCCAGCCCCAGTAGTCGTTAGTTGTTCATTTTggttatgtatttatattatacttGTATCTGTTtgattaatataaatttttttatctgcattttttgtgtgtattcTGCACACCTGCCTTtagctatatttataaatatt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046938 True 443 lncRNA 0.50 2 8832054 8841380

Neighbor

gene id symbol gene type direction distance location
XLOC_022779 tmem14ca coding upstream 90224 8736497 ~ 8741830 (+)
XLOC_022778 NA coding upstream 536607 8267583 ~ 8295447 (+)
XLOC_022777 NA coding upstream 586975 8243024 ~ 8245079 (+)
XLOC_022776 bmp6 coding upstream 896245 7861373 ~ 7935809 (+)
XLOC_022775 zgc:101569 coding upstream 977825 7828097 ~ 7854229 (+)
XLOC_022781 BX546453.2 coding downstream 8424 8849804 ~ 8892229 (+)
XLOC_022782 gnal coding downstream 62755 8904135 ~ 8973300 (+)
XLOC_022783 CR318624.2 coding downstream 162618 9003998 ~ 9016244 (+)
XLOC_022784 dlgap1b coding downstream 321132 9162512 ~ 9268048 (+)
XLOC_022785 NA coding downstream 433864 9275244 ~ 9281017 (+)
XLOC_022770 NA non-coding upstream 1274164 7553299 ~ 7557890 (+)
XLOC_022766 CR790361.1 non-coding upstream 2249886 6582052 ~ 6582168 (+)
XLOC_022765 BX120013.1 non-coding upstream 2426738 6405194 ~ 6405316 (+)
XLOC_022798 NA non-coding downstream 1575924 10417304 ~ 10509462 (+)
XLOC_022799 CT573344.2 non-coding downstream 1589146 10430526 ~ 10432439 (+)
XLOC_022800 CT573414.1 non-coding downstream 1976580 10817960 ~ 10818085 (+)
XLOC_022804 NA non-coding downstream 2493255 11334635 ~ 11346871 (+)

Expression


Co-expression Network