XLOC_022770


Basic Information

Item Value
gene id XLOC_022770
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 7553299 ~ 7557890 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046791
ATTCTTCAACAGGACGAGTTTTCTGCGTCTGGTCCAGCAGAGACAGCAGATGCGTCCTCCGTCACTGAGGCCTCAGGTGAGCTCGCCACTGCCCTCGCTGCAGGGGCCATCATGGTGGCTGAGCGCCCTGTTGAGGAGCCTCAGGTTGACATCTCCTCAGTGCCGTTTTTGGAGGCACCAGAAACATCACCAGGAGCTTCTGTGCCTGAGAACAGGGAACCCACCACATCCCCAGTCCTCAAGAGCCAGCCTGGAGCTCCTGTGTATGCCGAGTCTGACACCCCGGGCTACGGAAATCAAATCCCCACGCCTGCTGAGCCAGCTTTGGGCCCACCTGTGTGTCCTGGCAACGGATACATGTTTCAGATGGTTTCAGCAGAGCCTAAAGATTATAAAAGACTTCGAAGAGTTTCGAGGTGTCGCCGGTCTCCGACTCTGCAGCAGATAAGAGAGGCATGGGTGAGTTCCTGCTTCCTTTTAGTTATACTCAGTGTTACTGGGTGGAGATTTTAGTCTATACAGTAGTGAACATTTGAAAATTGAGATTGGGAGatgttcaatagttttaaaacaaccaGTGTTGACCACCCCACACCGAGTATACTATTATCTGCAGCCATCATTTAAAAGCTCACAGATCAACACATGATTTATCTAGAACCTGCTTCATTCATAGACTCCACATATAGAAGTTTAAATTGTCAGATCTTCAGGTTGTCTGTAAATCTGTTCAGAGTAACATGATTTTGTCTTTGTCTCCAACAGCTTAaagaataattatattatataattatatttaaatgcctCTTCAGAAGCAGCAGCATGTGGAGGTTGTGGCCAGTAGGGGACAAAATCGAATCCCTGAACCACAACCTGAAAGACCTCAGCTGACAGATGTGAACGAAATAATCCGTGAGCTTCTGTCTGGTCTTGAGCCTGCTCTTCCTCCCAAAGCAATGAGAGAACCGGATGAAGCATTTGTGAATCAGATGCCTCATCAGAACCTGCAGCATGTGGAGGTTGTGGCCAGTAGGGGACAAAATCAGATCCCTGAACCACAACCTGAGCAGCAGCAACAGAATGAACCTGAGAGACCCCAGCAGAGAGACTTAGTAATCAATGGAAGAGTCCGTGGGGTTCTGCGTGGTCTTCAGTCTGCTCGTCCTCTCAGAAGAATGAGAGAACAGCAGGAGGAAATTGTTAATCTCCAGAATCCTCCTCTCCGGCAACCCCGGCCTGGTCCACCGCCTACCTACATTCGCAGGACGGTGGTGGGCAGCATTGGAGATTTTGCACGCCATTGATGAGGAGTCTGAAAGATCAGCCTCAAAGATGAactaataaatcaataaagagATTGTAAACAGAGTTCTGGAACTATATTTATCCTTTTTGTCAATGccgcagc
>TCONS_00046793
GTTTTGGTAGATTCAGTGTTAAATCATAGACTTCACAGTAGCAATTTGAGTTGACAGATCTTCAGCTTGTCTGTAAATCTGTTGAGTAACATGATTTTGTCTTTGTCTCCAGCAGGATGAAGCATTTGTCAATCAGATGCCTCATCAGAACCTGCAGCATGTGGAGGTTGTGGCCAGTAGGGGACAAAATCAGATCCCTGAACCACAACCTGAGCAGCAGCAACAGAATGAACCTGAGAGACCCCAGCAGAGAGACTTAGTAGTGAACCGAAGAGTCCGTGGGGTTCTGCGTGGTCTTCAGTCTGCTCGTCCTCTCAGAAGAATGAGAGAACAGCAGGATGAAGCATTTGTGAATCAGATGCCTCATCAGAACCTGCAGCATGTGGAGGTTGTGGCCAGTAGGGGACAAAATCAGATCCCTGAACCACAACCTGAGCAGCAGCAACAGAATGAACCTGAGAGACCCCAGCAGAGAGACTTAGTAATCAATGGAAGAGTCCGTGGGGTTCTGCGTGGTCTTCAGTCTGCTCGTCCTCTCAGAAGAATGAGAGAACAGCAGGATGAAGCATTTGTGAATCAGATGCCTCATCAGAACCTGCAGCATGTGGAGGTTGTGGCCAGTAGGGGACAAAATCAGATCCCTGAACCACAACCTGAGCAGCAGCAACAGAATGAACCTGAGAGACCCCAGCAGAGAGACTTAGTAATCAATGGAAGAGTCCGTGGGGTTCTGCGTGGTCTTCAGTCTGCTCGTCCTCTCAGAAGAATGAGAGAACAGCAGGAGGAAATTGTTAATCTCCAGAATCCTCCTCTCCGGCAACCCCGGCCTGGTCCACCGCCTACCTACATTCGCAGGACGGTGGTGGGCAGCATTGGAGATTTTGCACGCCATTGATGAGGAGTCTGAAAGATCAGCCTCAAAGATGAactaataaatcaataaagagATTGTAAACAGAGTTCTGGAACTATATTTATCCTTTTTGTCAATGccgcagc
>TCONS_00046792
GTTTTGGTAGATTCAGTGTTAAATCATAGACTTCACAGTAGCAATTTGAGTTGACAGATCTTCAGCTTGTCTGTAAATCTGTTGAGTAACATGATTTTGTCTTTGTCTCCAGCAGGATGAAGCATTTGTCAATCAGATGCCTCATCAGAACCTGCAGCATGTGGAGGTTGTGGCCAGTAGGGGACAAAATCAGATCCCTGAACCACAACCTGAGCAGCAGCAACAGAATGAACCTGAGAGACCCCAGCAGAGAGACTTAGTAGTGAACCGAAGAGTCCGTGGGGTTCTGCGTGGTCTTCAGTCTGCTCGTCCTCTCAGAAGAATGAGAGAACAGCAGGATGAAGCATTTGTGAATCAGATGCCTCATCAGAACCTGCAGCATGTGGAGGTTGTGGCCAGTAGGGGACAAAATCAGATCCCTGAACCACAACCTGAGCAGCAGCAACAGAATGAACCTGAGAGACCCCAGCAGAGAGACTTAGTAATCAATGGAAGAGTCCGTGGGGTTCTGCGTGGTCTTCAGTCTGCTCGTCCTCTCAGAAGAATGAGAGAACAGCAGGAGGAAATTGTTAATCTCCAGAATCCTCCTCTCCGGCAACCCCGGCCTGGTCCACCGCCTACCTACATTCGCAGGACGGTGGTGGGCAGCATTGGAGATTTTGCACGCCATTGATGAGGAGTCTGAAAGATCAGCCTCAAAGATGAactaataaatcaataaagagATTGTAAACAGAGTTCTGGAACTATATTTATCCTTTTTGTCAATGccgcagc

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0040011 locomotion biological_process
GO:0006518 peptide metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046791 False 1408 lncRNA 0.48 4 7553299 7557890
TCONS_00046793 False 999 lncRNA 0.48 4 7554629 7557890
TCONS_00046792 True 777 lncRNA 0.47 3 7554629 7557890

Neighbor

gene id symbol gene type direction distance location
XLOC_022769 kmt2ca coding upstream 3689 7336411 ~ 7549610 (+)
XLOC_022768 XRCC2 coding upstream 223143 7322116 ~ 7330156 (+)
XLOC_022767 si:dkeyp-101e12.1 coding upstream 394998 7153628 ~ 7158301 (+)
XLOC_022766 CR790361.1 coding upstream 971131 6582052 ~ 6582168 (+)
XLOC_022765 BX120013.1 coding upstream 1147983 6405194 ~ 6405316 (+)
XLOC_022771 cavin1b coding downstream 73907 7631797 ~ 7668158 (+)
XLOC_022772 btr33 coding downstream 150762 7708652 ~ 7714562 (+)
XLOC_022773 zgc:56095 coding downstream 183631 7741521 ~ 7746478 (+)
XLOC_022774 ptprh coding downstream 224423 7782313 ~ 7816871 (+)
XLOC_022775 zgc:101569 coding downstream 270207 7828097 ~ 7854229 (+)
XLOC_022764 NA non-coding upstream 1153514 6389435 ~ 6399785 (+)
XLOC_022761 NA non-coding upstream 1464046 6082660 ~ 6089253 (+)
XLOC_022760 CR385039.1 non-coding upstream 1489514 6063671 ~ 6063785 (+)
XLOC_022777 NA non-coding downstream 685134 8243024 ~ 8245079 (+)
XLOC_022778 NA non-coding downstream 709693 8267583 ~ 8295447 (+)
XLOC_022780 NA non-coding downstream 1274164 8832054 ~ 8841380 (+)
XLOC_022785 NA non-coding downstream 1717354 9275244 ~ 9281017 (+)
XLOC_022798 NA non-coding downstream 2859414 10417304 ~ 10509462 (+)

Expression


Co-expression Network